[DATALAD RUNCMD] Compute SWU_4/sub-0025818/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025818/ses-1/anat/sub-0025818_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025818/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025818/ses-1/label/catROI_sub-0025818_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gF/Qq/MD5E-s57737--80a239197b6310573e786dac486bc8b4.mat/MD5E-s57737--80a239197b6310573e786dac486bc8b4.mat

SWU_4/sub-0025818/ses-1/label/catROI_sub-0025818_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/fw/MD5E-s188628--18dfe303fdcb9c4c19a7beb5a5c7be22.xml/MD5E-s188628--18dfe303fdcb9c4c19a7beb5a5c7be22.xml

SWU_4/sub-0025818/ses-1/label/catROIs_sub-0025818_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/26/gf/MD5E-s120041--b8ee73c1ea78390f5b2357b7cc2b9039.mat/MD5E-s120041--b8ee73c1ea78390f5b2357b7cc2b9039.mat

SWU_4/sub-0025818/ses-1/label/catROIs_sub-0025818_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/2P/MD5E-s332127--1d76cb6c1cdff09df71687332c2a0a4e.xml/MD5E-s332127--1d76cb6c1cdff09df71687332c2a0a4e.xml

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p0/m2/MD5E-s161676--4a0abda8ebcccd02c997fd48af442394.nii.gz/MD5E-s161676--4a0abda8ebcccd02c997fd48af442394.nii.gz

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/qw/MD5E-s180611--02439724f9d44ad8b582a36ed9e89d77.nii.gz/MD5E-s180611--02439724f9d44ad8b582a36ed9e89d77.nii.gz

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/Gz/MD5E-s244546--cad77987a402147afc70699a8c09b6b4.nii.gz/MD5E-s244546--cad77987a402147afc70699a8c09b6b4.nii.gz

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025818/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9g/9f/MD5E-s271611--8271a49f26d5321108c7b2ff83f48566.nii.gz/MD5E-s271611--8271a49f26d5321108c7b2ff83f48566.nii.gz

SWU_4/sub-0025818/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025818/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/PQ/MD5E-s24834--72e0f51f833f6fa96cc3e48bea7cc6b3.nii.gz/MD5E-s24834--72e0f51f833f6fa96cc3e48bea7cc6b3.nii.gz

SWU_4/sub-0025818/ses-1/mri/aal3_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025818/ses-1/mri/aal3_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vZ/05/MD5E-s183922--59c4b69fa3ed7bc0d47fc827d388c755.nii.gz/MD5E-s183922--59c4b69fa3ed7bc0d47fc827d388c755.nii.gz

SWU_4/sub-0025818/ses-1/mri/anatomy3_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025818/ses-1/mri/anatomy3_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wv/6Z/MD5E-s132559--945fc10b651c1f3e20ef83238eb41d2a.nii.gz/MD5E-s132559--945fc10b651c1f3e20ef83238eb41d2a.nii.gz

SWU_4/sub-0025818/ses-1/mri/anon_misub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xq/Zq/MD5E-s8969693--62b1c552bbfe3846588739b2d1642f2e.nii.gz/MD5E-s8969693--62b1c552bbfe3846588739b2d1642f2e.nii.gz

SWU_4/sub-0025818/ses-1/mri/anon_msub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FK/g8/MD5E-s8888456--3834283beab5a194eb20090cbe5a0d8a.nii.gz/MD5E-s8888456--3834283beab5a194eb20090cbe5a0d8a.nii.gz

SWU_4/sub-0025818/ses-1/mri/cat_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/Xw/MD5E-s97926--d59163c62f63e09e715e0e3df1c9657f.nii.gz/MD5E-s97926--d59163c62f63e09e715e0e3df1c9657f.nii.gz

SWU_4/sub-0025818/ses-1/mri/cobra_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025818/ses-1/mri/cobra_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V0/mp/MD5E-s48388--b0c88b7be62c3faacab3d6e07b52a775.nii.gz/MD5E-s48388--b0c88b7be62c3faacab3d6e07b52a775.nii.gz

SWU_4/sub-0025818/ses-1/mri/hammers_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025818/ses-1/mri/hammers_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/kx/MD5E-s143015--3f2027aa2a1e3d587a787fe0c7bb3472.nii.gz/MD5E-s143015--3f2027aa2a1e3d587a787fe0c7bb3472.nii.gz

SWU_4/sub-0025818/ses-1/mri/ibsr_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025818/ses-1/mri/ibsr_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6f/Mj/MD5E-s152160--24258ccf574c37227cea491e03dbfae5.nii.gz/MD5E-s152160--24258ccf574c37227cea491e03dbfae5.nii.gz

SWU_4/sub-0025818/ses-1/mri/it_sub-0025818_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qM/G4/MD5E-s283--4d2d96ed2c3ef775d02890e4489a4d24.mat/MD5E-s283--4d2d96ed2c3ef775d02890e4489a4d24.mat

SWU_4/sub-0025818/ses-1/mri/it_sub-0025818_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/kQ/MD5E-s283--8ad5515f1f59cb07824ff7d1848d2d4d.mat/MD5E-s283--8ad5515f1f59cb07824ff7d1848d2d4d.mat

SWU_4/sub-0025818/ses-1/mri/iy_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/mG/MD5E-s45238114--240ac99f711bcf4170abf8e7c6692e71.nii.gz/MD5E-s45238114--240ac99f711bcf4170abf8e7c6692e71.nii.gz

SWU_4/sub-0025818/ses-1/mri/julichbrain_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025818/ses-1/mri/julichbrain_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/7M/MD5E-s193106--edba1641c1eccb17d982eaf27a9bf377.nii.gz/MD5E-s193106--edba1641c1eccb17d982eaf27a9bf377.nii.gz

SWU_4/sub-0025818/ses-1/mri/lpba40_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025818/ses-1/mri/lpba40_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/13/MD5E-s139987--6ad98c34bd8d8c9c268770580a1e6d6b.nii.gz/MD5E-s139987--6ad98c34bd8d8c9c268770580a1e6d6b.nii.gz

SWU_4/sub-0025818/ses-1/mri/m0wp1sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vm/g5/MD5E-s2581538--9895196a243409ab8cb3d1a7ade0d47f.nii.gz/MD5E-s2581538--9895196a243409ab8cb3d1a7ade0d47f.nii.gz

SWU_4/sub-0025818/ses-1/mri/m0wp2sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gm/zp/MD5E-s2301926--39fcccc284d2086ef35e4ce1a409bfc7.nii.gz/MD5E-s2301926--39fcccc284d2086ef35e4ce1a409bfc7.nii.gz

SWU_4/sub-0025818/ses-1/mri/m0wp3sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pm/QJ/MD5E-s2497074--1eee65af5f279d94f2835a6ba2498a98.nii.gz/MD5E-s2497074--1eee65af5f279d94f2835a6ba2498a98.nii.gz

SWU_4/sub-0025818/ses-1/mri/mori_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025818/ses-1/mri/mori_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/x9/MD5E-s168193--8729213ead1f33fcddc1f4b9f9a83d5d.nii.gz/MD5E-s168193--8729213ead1f33fcddc1f4b9f9a83d5d.nii.gz

SWU_4/sub-0025818/ses-1/mri/mwp1sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/wP/MD5E-s2585384--b2108c310dec6b8d5fef6022d30b6bae.nii.gz/MD5E-s2585384--b2108c310dec6b8d5fef6022d30b6bae.nii.gz

SWU_4/sub-0025818/ses-1/mri/mwp2sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/Xm/MD5E-s2301033--db9452d8d341c0517532adb8670b7eb6.nii.gz/MD5E-s2301033--db9452d8d341c0517532adb8670b7eb6.nii.gz

SWU_4/sub-0025818/ses-1/mri/mwp3sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/fx/MD5E-s2493403--a06a54cf90d9fb871b8d3fc1086139fc.nii.gz/MD5E-s2493403--a06a54cf90d9fb871b8d3fc1086139fc.nii.gz

SWU_4/sub-0025818/ses-1/mri/neuromorphometrics_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025818/ses-1/mri/neuromorphometrics_sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/1W/MD5E-s194992--289da204be2824001f64945dfe93c112.nii.gz/MD5E-s194992--289da204be2824001f64945dfe93c112.nii.gz

SWU_4/sub-0025818/ses-1/mri/p0sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/PQ/MD5E-s613916--d41df5538af5c19eed351c694e59ecc0.nii.gz/MD5E-s613916--d41df5538af5c19eed351c694e59ecc0.nii.gz

SWU_4/sub-0025818/ses-1/mri/p1sub-0025818_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4v/W1/MD5E-s655516--e686414bd058584bc490d217f5363909.nii.gz/MD5E-s655516--e686414bd058584bc490d217f5363909.nii.gz

SWU_4/sub-0025818/ses-1/mri/p2sub-0025818_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/PZ/k6/MD5E-s433850--2f3748d7926c9656a831b40a77772eb6.nii.gz/MD5E-s433850--2f3748d7926c9656a831b40a77772eb6.nii.gz

SWU_4/sub-0025818/ses-1/mri/p3sub-0025818_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025818/ses-1/mri/rp1sub-0025818_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025818/ses-1/mri/rp2sub-0025818_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/q6/MD5E-s307232--b8eb0dbc27e36edfb3bf4f14a70ea7d6.nii.gz/MD5E-s307232--b8eb0dbc27e36edfb3bf4f14a70ea7d6.nii.gz

SWU_4/sub-0025818/ses-1/mri/rp3sub-0025818_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025818/ses-1/mri/t_sub-0025818_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/q3/MD5E-s284--89fa8bc4ac7cbf870596c37f303776f7.mat/MD5E-s284--89fa8bc4ac7cbf870596c37f303776f7.mat

SWU_4/sub-0025818/ses-1/mri/t_sub-0025818_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mq/Gz/MD5E-s283--1df1334d38847b1c6e53ffa94795a322.mat/MD5E-s283--1df1334d38847b1c6e53ffa94795a322.mat

SWU_4/sub-0025818/ses-1/mri/thalamus_sub-0025818_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025818/ses-1/mri/thalamus_sub-0025818_ses-1_run-1_T1w.nii.gz

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