[DATALAD RUNCMD] Compute MRN/sub-0027030/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027030/ses-1/anat/sub-0027030_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027030/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027030/ses-1/label/catROI_sub-0027030_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/kq/MD5E-s61361--4e0d4307529bf8373ef9454d18f4fbf3.mat/MD5E-s61361--4e0d4307529bf8373ef9454d18f4fbf3.mat

MRN/sub-0027030/ses-1/label/catROI_sub-0027030_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/57/MD5E-s188888--a06c9f9852e1a7afe94ed873d2a05a0c.xml/MD5E-s188888--a06c9f9852e1a7afe94ed873d2a05a0c.xml

MRN/sub-0027030/ses-1/label/catROIs_sub-0027030_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/K9/MD5E-s120020--ead937f5f3b3e7618868e173870cebb6.mat/MD5E-s120020--ead937f5f3b3e7618868e173870cebb6.mat

MRN/sub-0027030/ses-1/label/catROIs_sub-0027030_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v0/Pm/MD5E-s332147--d228863861a5659598e59602100f74f7.xml/MD5E-s332147--d228863861a5659598e59602100f74f7.xml

MRN/sub-0027030/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027030/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/Kz/MD5E-s182700--4327fb14c0452acca201982aee3f6819.nii.gz/MD5E-s182700--4327fb14c0452acca201982aee3f6819.nii.gz

MRN/sub-0027030/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027030/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/1M/MD5E-s204655--3974d5aa534aac2babc0aeddbb22f801.nii.gz/MD5E-s204655--3974d5aa534aac2babc0aeddbb22f801.nii.gz

MRN/sub-0027030/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027030/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F8/2k/MD5E-s273515--4e0d820f2f5b7a4a0ab3c07a85a94b55.nii.gz/MD5E-s273515--4e0d820f2f5b7a4a0ab3c07a85a94b55.nii.gz

MRN/sub-0027030/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027030/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/fp/MD5E-s305116--55aa2909d208e28ff1ee7547cc199935.nii.gz/MD5E-s305116--55aa2909d208e28ff1ee7547cc199935.nii.gz

MRN/sub-0027030/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027030/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wW/kF/MD5E-s26704--b4f1fe564eab9c9dbf5afd2f86b61536.nii.gz/MD5E-s26704--b4f1fe564eab9c9dbf5afd2f86b61536.nii.gz

MRN/sub-0027030/ses-1/mri/aal3_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

MRN/sub-0027030/ses-1/mri/aal3_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GM/Xp/MD5E-s205191--82a1cbe657c14edf221b422138893c10.nii.gz/MD5E-s205191--82a1cbe657c14edf221b422138893c10.nii.gz

MRN/sub-0027030/ses-1/mri/anatomy3_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027030/ses-1/mri/anatomy3_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mp/33/MD5E-s149693--1985678b97aec6313054145216c9a4ca.nii.gz/MD5E-s149693--1985678b97aec6313054145216c9a4ca.nii.gz

MRN/sub-0027030/ses-1/mri/anon_misub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fg/5k/MD5E-s12713953--c3743593588b3b4caa5199f88b81f4ee.nii.gz/MD5E-s12713953--c3743593588b3b4caa5199f88b81f4ee.nii.gz

MRN/sub-0027030/ses-1/mri/anon_msub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4f/07/MD5E-s13144086--fae1cb50494eb96ca71ca766b9084ad6.nii.gz/MD5E-s13144086--fae1cb50494eb96ca71ca766b9084ad6.nii.gz

MRN/sub-0027030/ses-1/mri/cat_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mg/jZ/MD5E-s106139--f84a8b5895455cd8ad71e14b394b678f.nii.gz/MD5E-s106139--f84a8b5895455cd8ad71e14b394b678f.nii.gz

MRN/sub-0027030/ses-1/mri/cobra_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027030/ses-1/mri/cobra_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/v8/MD5E-s50754--d71ca814670ec4e549e516ceec1cf60d.nii.gz/MD5E-s50754--d71ca814670ec4e549e516ceec1cf60d.nii.gz

MRN/sub-0027030/ses-1/mri/hammers_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027030/ses-1/mri/hammers_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/81/MD5E-s159240--b9d51acbcb078a9bc040cd8f9675ae74.nii.gz/MD5E-s159240--b9d51acbcb078a9bc040cd8f9675ae74.nii.gz

MRN/sub-0027030/ses-1/mri/ibsr_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027030/ses-1/mri/ibsr_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/08/MD5E-s168354--607832cf099554f59c69e8f832d37e93.nii.gz/MD5E-s168354--607832cf099554f59c69e8f832d37e93.nii.gz

MRN/sub-0027030/ses-1/mri/it_sub-0027030_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/QF/MD5E-s283--fd59fe4a8df1da376d767a01d54defa8.mat/MD5E-s283--fd59fe4a8df1da376d767a01d54defa8.mat

MRN/sub-0027030/ses-1/mri/it_sub-0027030_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/7F/MD5E-s283--0d89b4df4e8c3f770bf00f2388e7124c.mat/MD5E-s283--0d89b4df4e8c3f770bf00f2388e7124c.mat

MRN/sub-0027030/ses-1/mri/iy_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/J0/MD5E-s49100389--f18cbaba619533ef207ee050f33bdbc5.nii.gz/MD5E-s49100389--f18cbaba619533ef207ee050f33bdbc5.nii.gz

MRN/sub-0027030/ses-1/mri/julichbrain_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

MRN/sub-0027030/ses-1/mri/julichbrain_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/jx/MD5E-s217566--476466141da26cc3d8c3914367461913.nii.gz/MD5E-s217566--476466141da26cc3d8c3914367461913.nii.gz

MRN/sub-0027030/ses-1/mri/lpba40_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

MRN/sub-0027030/ses-1/mri/lpba40_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/m0wp1sub-0027030_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027030/ses-1/mri/m0wp2sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/m0wp3sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/z5/MD5E-s2500815--caf8e121b49911ec61e2cdd887667a5f.nii.gz/MD5E-s2500815--caf8e121b49911ec61e2cdd887667a5f.nii.gz

MRN/sub-0027030/ses-1/mri/mori_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

MRN/sub-0027030/ses-1/mri/mori_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q4/pf/MD5E-s187539--412438f1da00afef3521af9c94b4b0e3.nii.gz/MD5E-s187539--412438f1da00afef3521af9c94b4b0e3.nii.gz

MRN/sub-0027030/ses-1/mri/mwp1sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/QQ/MD5E-s2576035--1f3950ae9eb44d584a09ed2cbb92f7b4.nii.gz/MD5E-s2576035--1f3950ae9eb44d584a09ed2cbb92f7b4.nii.gz

MRN/sub-0027030/ses-1/mri/mwp2sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/mwp3sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/gj/MD5E-s2498929--62a89dbafd248fc1591520a46aa39e83.nii.gz/MD5E-s2498929--62a89dbafd248fc1591520a46aa39e83.nii.gz

MRN/sub-0027030/ses-1/mri/neuromorphometrics_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/neuromorphometrics_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/p0sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/p1sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/p2sub-0027030_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027030/ses-1/mri/p3sub-0027030_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027030/ses-1/mri/rp1sub-0027030_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027030/ses-1/mri/rp2sub-0027030_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027030/ses-1/mri/rp3sub-0027030_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027030/ses-1/mri/t_sub-0027030_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027030/ses-1/mri/t_sub-0027030_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027030/ses-1/mri/thalamus_sub-0027030_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/thalamus_sub-0027030_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027030/ses-1/mri/wj_sub-0027030_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027030/ses-1/mri/wmisub-0027030_ses-1_run-1_T1w.nii.gz

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