[DATALAD RUNCMD] Compute SWU_4/sub-0025780/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025780/ses-2/anat/sub-0025780_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025780/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025780/ses-2/label/catROI_sub-0025780_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mM/0m/MD5E-s61212--ee70138d58e3a9049fa9dacf1e96273f.mat/MD5E-s61212--ee70138d58e3a9049fa9dacf1e96273f.mat

SWU_4/sub-0025780/ses-2/label/catROI_sub-0025780_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/11/MD5E-s188685--555f1db1b8a3637f222d52bbfe0e43a1.xml/MD5E-s188685--555f1db1b8a3637f222d52bbfe0e43a1.xml

SWU_4/sub-0025780/ses-2/label/catROIs_sub-0025780_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kx/zk/MD5E-s120108--e47d14f6b738720e273bb3a16a5fcca6.mat/MD5E-s120108--e47d14f6b738720e273bb3a16a5fcca6.mat

SWU_4/sub-0025780/ses-2/label/catROIs_sub-0025780_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W0/06/MD5E-s332016--44d72e172e0a4c664e70dfe8db0aaf84.xml/MD5E-s332016--44d72e172e0a4c664e70dfe8db0aaf84.xml

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/wV/MD5E-s167955--0cfdf8c35212119a0f176abe99f17161.nii.gz/MD5E-s167955--0cfdf8c35212119a0f176abe99f17161.nii.gz

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/8z/MD5E-s187918--fb40dd33ebee0cebbac30ef324d3f8dc.nii.gz/MD5E-s187918--fb40dd33ebee0cebbac30ef324d3f8dc.nii.gz

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/MW/MD5E-s253756--26cc34f4237a4812ff694c7986dd130a.nii.gz/MD5E-s253756--26cc34f4237a4812ff694c7986dd130a.nii.gz

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025780/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/Kv/MD5E-s281669--58ff0c3be831dc24d77fbb9f8fbac3af.nii.gz/MD5E-s281669--58ff0c3be831dc24d77fbb9f8fbac3af.nii.gz

SWU_4/sub-0025780/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025780/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/Vk/MD5E-s24903--d1189b2dd74c61d5839e72aa6ad0b343.nii.gz/MD5E-s24903--d1189b2dd74c61d5839e72aa6ad0b343.nii.gz

SWU_4/sub-0025780/ses-2/mri/aal3_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025780/ses-2/mri/aal3_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/92/M5/MD5E-s191186--2d8e99df70e96ab35a61da611f7d6afe.nii.gz/MD5E-s191186--2d8e99df70e96ab35a61da611f7d6afe.nii.gz

SWU_4/sub-0025780/ses-2/mri/anatomy3_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025780/ses-2/mri/anatomy3_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/pZ/MD5E-s138269--2b93a6bc6ce3221297e53e48aac29e33.nii.gz/MD5E-s138269--2b93a6bc6ce3221297e53e48aac29e33.nii.gz

SWU_4/sub-0025780/ses-2/mri/anon_misub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/fm/MD5E-s9605322--47769a625bf239404fd9470fdaba1952.nii.gz/MD5E-s9605322--47769a625bf239404fd9470fdaba1952.nii.gz

SWU_4/sub-0025780/ses-2/mri/anon_msub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WQ/6P/MD5E-s10964117--2ac1200d6dab27eed73b6d73b14b1129.nii.gz/MD5E-s10964117--2ac1200d6dab27eed73b6d73b14b1129.nii.gz

SWU_4/sub-0025780/ses-2/mri/cat_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/6Q/MD5E-s100878--ed4cb7d969d1278c97f787d8df927104.nii.gz/MD5E-s100878--ed4cb7d969d1278c97f787d8df927104.nii.gz

SWU_4/sub-0025780/ses-2/mri/cobra_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025780/ses-2/mri/cobra_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gj/z0/MD5E-s50098--b481c544b5f7a8978a166db2500d45cd.nii.gz/MD5E-s50098--b481c544b5f7a8978a166db2500d45cd.nii.gz

SWU_4/sub-0025780/ses-2/mri/hammers_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025780/ses-2/mri/hammers_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/2f/MD5E-s149287--134017077e833a5f0aea43cf665f138c.nii.gz/MD5E-s149287--134017077e833a5f0aea43cf665f138c.nii.gz

SWU_4/sub-0025780/ses-2/mri/ibsr_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025780/ses-2/mri/ibsr_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/q5/MD5E-s159320--823202068456cc7aa437bc38558f359b.nii.gz/MD5E-s159320--823202068456cc7aa437bc38558f359b.nii.gz

SWU_4/sub-0025780/ses-2/mri/it_sub-0025780_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/2z/MD5E-s282--295ce13904e3ba16f56f0939fc53b8a3.mat/MD5E-s282--295ce13904e3ba16f56f0939fc53b8a3.mat

SWU_4/sub-0025780/ses-2/mri/it_sub-0025780_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jx/F3/MD5E-s282--6ef38362d257154c0f3556e46b0bdac8.mat/MD5E-s282--6ef38362d257154c0f3556e46b0bdac8.mat

SWU_4/sub-0025780/ses-2/mri/iy_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mm/mQ/MD5E-s46864767--fb8ed5bdae43bd790404bf7af9cd34fa.nii.gz/MD5E-s46864767--fb8ed5bdae43bd790404bf7af9cd34fa.nii.gz

SWU_4/sub-0025780/ses-2/mri/julichbrain_sub-0025780_ses-2_run-1_T1w.csv

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SWU_4/sub-0025780/ses-2/mri/julichbrain_sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/lpba40_sub-0025780_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025780/ses-2/mri/lpba40_sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/m0wp1sub-0025780_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/6g/g7/MD5E-s2578101--b904836c43ee04d3ac734441ac243c30.nii.gz/MD5E-s2578101--b904836c43ee04d3ac734441ac243c30.nii.gz

SWU_4/sub-0025780/ses-2/mri/m0wp2sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/v0/MD5E-s2301528--e4ca3a25f83583ea98e478537787f122.nii.gz/MD5E-s2301528--e4ca3a25f83583ea98e478537787f122.nii.gz

SWU_4/sub-0025780/ses-2/mri/m0wp3sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/2x/MD5E-s2572978--3456490fc024b6fffe8e7e0efaa87a84.nii.gz/MD5E-s2572978--3456490fc024b6fffe8e7e0efaa87a84.nii.gz

SWU_4/sub-0025780/ses-2/mri/mori_sub-0025780_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025780/ses-2/mri/mori_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025780/ses-2/mri/mwp1sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/mwp2sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/mwp3sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/neuromorphometrics_sub-0025780_ses-2_run-1_T1w.csv

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SWU_4/sub-0025780/ses-2/mri/neuromorphometrics_sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/p0sub-0025780_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/KK/Kq/MD5E-s660915--63073859221ff9c1854ca291bed5ac1c.nii.gz/MD5E-s660915--63073859221ff9c1854ca291bed5ac1c.nii.gz

SWU_4/sub-0025780/ses-2/mri/p1sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/p2sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/p3sub-0025780_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025780/ses-2/mri/rp1sub-0025780_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025780/ses-2/mri/rp2sub-0025780_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025780/ses-2/mri/rp3sub-0025780_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025780/ses-2/mri/t_sub-0025780_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025780/ses-2/mri/t_sub-0025780_ses-2_run-1_T1w_rigid_reorient.mat

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SWU_4/sub-0025780/ses-2/mri/thalamus_sub-0025780_ses-2_run-1_T1w.csv

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SWU_4/sub-0025780/ses-2/mri/thalamus_sub-0025780_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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