[DATALAD RUNCMD] Compute NYU_2/sub-0025015/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025015/ses-1/anat/sub-0025015_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025015/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025015/ses-1/label/catROI_sub-0025015_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/k3/MD5E-s57912--23e61e371e948010391ddf5829174ae6.mat/MD5E-s57912--23e61e371e948010391ddf5829174ae6.mat

NYU_2/sub-0025015/ses-1/label/catROI_sub-0025015_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qF/6g/MD5E-s188806--bfe0094ba5e4b69e16ea4d3f61de6bff.xml/MD5E-s188806--bfe0094ba5e4b69e16ea4d3f61de6bff.xml

NYU_2/sub-0025015/ses-1/label/catROIs_sub-0025015_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/0p/MD5E-s120330--119f7fdd3a2c56b0a849ba56266d7e52.mat/MD5E-s120330--119f7fdd3a2c56b0a849ba56266d7e52.mat

NYU_2/sub-0025015/ses-1/label/catROIs_sub-0025015_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9q/9z/MD5E-s332183--c5be11dbb54e5486313088307b2a39cf.xml/MD5E-s332183--c5be11dbb54e5486313088307b2a39cf.xml

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/K1/MD5E-s143253--522154f8749ea5e20d65e0ce555cc775.nii.gz/MD5E-s143253--522154f8749ea5e20d65e0ce555cc775.nii.gz

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XF/3X/MD5E-s160082--f044cf57b6d68e324bc1f367ea1bc840.nii.gz/MD5E-s160082--f044cf57b6d68e324bc1f367ea1bc840.nii.gz

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k0/wP/MD5E-s216368--612d89e856fe43c37ada228cff307462.nii.gz/MD5E-s216368--612d89e856fe43c37ada228cff307462.nii.gz

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025015/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/08/MD5E-s239535--7d8a5f053ba6b616a5451f82d0b2f8f3.nii.gz/MD5E-s239535--7d8a5f053ba6b616a5451f82d0b2f8f3.nii.gz

NYU_2/sub-0025015/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025015/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k8/96/MD5E-s19401--97cfba7c74def8c9ca2da5743eee89db.nii.gz/MD5E-s19401--97cfba7c74def8c9ca2da5743eee89db.nii.gz

NYU_2/sub-0025015/ses-1/mri/aal3_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025015/ses-1/mri/aal3_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/JF/MD5E-s160462--b0961f39e0d9f4d4d6bed3303090c23b.nii.gz/MD5E-s160462--b0961f39e0d9f4d4d6bed3303090c23b.nii.gz

NYU_2/sub-0025015/ses-1/mri/anatomy3_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025015/ses-1/mri/anatomy3_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/kp/MD5E-s115936--f7e90945cd60652888e8cf509474369e.nii.gz/MD5E-s115936--f7e90945cd60652888e8cf509474369e.nii.gz

NYU_2/sub-0025015/ses-1/mri/anon_misub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W8/xK/MD5E-s3604818--ee890fc75cd0db042bd1988e3880a4e1.nii.gz/MD5E-s3604818--ee890fc75cd0db042bd1988e3880a4e1.nii.gz

NYU_2/sub-0025015/ses-1/mri/anon_msub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/W1/MD5E-s9732471--7cda825e717a7211269f443f72820263.nii.gz/MD5E-s9732471--7cda825e717a7211269f443f72820263.nii.gz

NYU_2/sub-0025015/ses-1/mri/cat_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/33/MD5E-s84675--6e38b432c36b3718e349c01af8e6fd5e.nii.gz/MD5E-s84675--6e38b432c36b3718e349c01af8e6fd5e.nii.gz

NYU_2/sub-0025015/ses-1/mri/cobra_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025015/ses-1/mri/cobra_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/1F/MD5E-s38178--793e3798bad0c9aeda6f0c69147c8d69.nii.gz/MD5E-s38178--793e3798bad0c9aeda6f0c69147c8d69.nii.gz

NYU_2/sub-0025015/ses-1/mri/hammers_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025015/ses-1/mri/hammers_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pw/fz/MD5E-s124056--a6a749e6a52181df4fc10f4877840aea.nii.gz/MD5E-s124056--a6a749e6a52181df4fc10f4877840aea.nii.gz

NYU_2/sub-0025015/ses-1/mri/ibsr_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025015/ses-1/mri/ibsr_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q5/73/MD5E-s129849--6af4ff21320a552455a1fd5108abb113.nii.gz/MD5E-s129849--6af4ff21320a552455a1fd5108abb113.nii.gz

NYU_2/sub-0025015/ses-1/mri/it_sub-0025015_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/mP/MD5E-s284--f96877c9551b88606164afc4f893a875.mat/MD5E-s284--f96877c9551b88606164afc4f893a875.mat

NYU_2/sub-0025015/ses-1/mri/it_sub-0025015_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xg/92/MD5E-s284--23a0bd92cf89ac8f3c773f052a7fb35a.mat/MD5E-s284--23a0bd92cf89ac8f3c773f052a7fb35a.mat

NYU_2/sub-0025015/ses-1/mri/iy_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9F/fk/MD5E-s32461979--3eeb896274ef6888d82be6291b571fef.nii.gz/MD5E-s32461979--3eeb896274ef6888d82be6291b571fef.nii.gz

NYU_2/sub-0025015/ses-1/mri/julichbrain_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

NYU_2/sub-0025015/ses-1/mri/julichbrain_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/vG/MD5E-s169844--c7e1bf1d2373ce757a1f0271524cf15a.nii.gz/MD5E-s169844--c7e1bf1d2373ce757a1f0271524cf15a.nii.gz

NYU_2/sub-0025015/ses-1/mri/lpba40_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

NYU_2/sub-0025015/ses-1/mri/lpba40_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/V0/MD5E-s121521--0b1be89bcd52c8fdeeee2dbed52f287a.nii.gz/MD5E-s121521--0b1be89bcd52c8fdeeee2dbed52f287a.nii.gz

NYU_2/sub-0025015/ses-1/mri/m0wp1sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/jp/MD5E-s2599795--e13cb8ced9d99e6bb8b71d54ef2cf09c.nii.gz/MD5E-s2599795--e13cb8ced9d99e6bb8b71d54ef2cf09c.nii.gz

NYU_2/sub-0025015/ses-1/mri/m0wp2sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/QG/MD5E-s2250879--46ebdd3e6c41f6f93f77da3d94ef90a3.nii.gz/MD5E-s2250879--46ebdd3e6c41f6f93f77da3d94ef90a3.nii.gz

NYU_2/sub-0025015/ses-1/mri/m0wp3sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/f7/MD5E-s2281373--cc09863a2f235c94db7a477ee977aa6f.nii.gz/MD5E-s2281373--cc09863a2f235c94db7a477ee977aa6f.nii.gz

NYU_2/sub-0025015/ses-1/mri/mori_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025015/ses-1/mri/mori_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/Qw/MD5E-s146315--72be13720b2ea253a7b61469ecefdd75.nii.gz/MD5E-s146315--72be13720b2ea253a7b61469ecefdd75.nii.gz

NYU_2/sub-0025015/ses-1/mri/mwp1sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/zM/MD5E-s2603318--d8c6858b14ba45007f43dcbaaf60f134.nii.gz/MD5E-s2603318--d8c6858b14ba45007f43dcbaaf60f134.nii.gz

NYU_2/sub-0025015/ses-1/mri/mwp2sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/Fp/MD5E-s2255970--8b169fabb212fdf519f67fea3a880de6.nii.gz/MD5E-s2255970--8b169fabb212fdf519f67fea3a880de6.nii.gz

NYU_2/sub-0025015/ses-1/mri/mwp3sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XW/58/MD5E-s2277171--de8106bee99efe62c321274dc3ff1d51.nii.gz/MD5E-s2277171--de8106bee99efe62c321274dc3ff1d51.nii.gz

NYU_2/sub-0025015/ses-1/mri/neuromorphometrics_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

NYU_2/sub-0025015/ses-1/mri/neuromorphometrics_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KG/2g/MD5E-s170980--34e1c5acdefa2d83ab4df5729e911430.nii.gz/MD5E-s170980--34e1c5acdefa2d83ab4df5729e911430.nii.gz

NYU_2/sub-0025015/ses-1/mri/p0sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/V7/MD5E-s665907--35a6c21c05c72b330c1db1f1b30cb34a.nii.gz/MD5E-s665907--35a6c21c05c72b330c1db1f1b30cb34a.nii.gz

NYU_2/sub-0025015/ses-1/mri/p1sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/jp/MD5E-s703588--7960b02d7cf5224086286fca5463728a.nii.gz/MD5E-s703588--7960b02d7cf5224086286fca5463728a.nii.gz

NYU_2/sub-0025015/ses-1/mri/p2sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0q/zz/MD5E-s502918--949d43322a678db3cf31bdb9743f0287.nii.gz/MD5E-s502918--949d43322a678db3cf31bdb9743f0287.nii.gz

NYU_2/sub-0025015/ses-1/mri/p3sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025015/ses-1/mri/rp1sub-0025015_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025015/ses-1/mri/rp2sub-0025015_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025015/ses-1/mri/rp3sub-0025015_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025015/ses-1/mri/t_sub-0025015_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025015/ses-1/mri/t_sub-0025015_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P3/Mg/MD5E-s284--4748919d818ff204602992711c868e8a.mat/MD5E-s284--4748919d818ff204602992711c868e8a.mat

NYU_2/sub-0025015/ses-1/mri/thalamus_sub-0025015_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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NYU_2/sub-0025015/ses-1/mri/thalamus_sub-0025015_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/kv/MD5E-s12337--d5cfe9fd295123571b6b9c8c073780cd.nii.gz/MD5E-s12337--d5cfe9fd295123571b6b9c8c073780cd.nii.gz

NYU_2/sub-0025015/ses-1/mri/wj_sub-0025015_ses-1_run-1_T1w.nii.gz

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