[DATALAD RUNCMD] Compute SWU_4/sub-0025763/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025763/ses-1/anat/sub-0025763_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025763/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025763/ses-1/label/catROI_sub-0025763_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/03/MD5E-s57819--b9db9fc2751066049ce872c9ecc68963.mat/MD5E-s57819--b9db9fc2751066049ce872c9ecc68963.mat

SWU_4/sub-0025763/ses-1/label/catROI_sub-0025763_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/G9/MD5E-s188876--f8074705b2a08a16e2e2f04e192ca8cb.xml/MD5E-s188876--f8074705b2a08a16e2e2f04e192ca8cb.xml

SWU_4/sub-0025763/ses-1/label/catROIs_sub-0025763_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/fm/MD5E-s120183--bd518f777181caec8ff0206ff22a4825.mat/MD5E-s120183--bd518f777181caec8ff0206ff22a4825.mat

SWU_4/sub-0025763/ses-1/label/catROIs_sub-0025763_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/qv/MD5E-s332160--8275c38e4bcca4b756b5b3d48b088dbd.xml/MD5E-s332160--8275c38e4bcca4b756b5b3d48b088dbd.xml

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/7G/MD5E-s152994--c9bca2062d438259e6e947e0d64e90dc.nii.gz/MD5E-s152994--c9bca2062d438259e6e947e0d64e90dc.nii.gz

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/KW/MD5E-s173300--c700ca450194a9e9104d914886197518.nii.gz/MD5E-s173300--c700ca450194a9e9104d914886197518.nii.gz

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/Qg/MD5E-s231456--136db59ed02ff4d0955a52e450e79675.nii.gz/MD5E-s231456--136db59ed02ff4d0955a52e450e79675.nii.gz

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025763/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/ZG/MD5E-s258335--4cfda1f6123f7fcc77cf6b66986bda7a.nii.gz/MD5E-s258335--4cfda1f6123f7fcc77cf6b66986bda7a.nii.gz

SWU_4/sub-0025763/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025763/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/m2/MD5E-s24737--0182f22d53074be99bd1cbd197e5301d.nii.gz/MD5E-s24737--0182f22d53074be99bd1cbd197e5301d.nii.gz

SWU_4/sub-0025763/ses-1/mri/aal3_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025763/ses-1/mri/aal3_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/jQ/MD5E-s175491--966e291cc0c1b8a1eed21ca3b6ab2d23.nii.gz/MD5E-s175491--966e291cc0c1b8a1eed21ca3b6ab2d23.nii.gz

SWU_4/sub-0025763/ses-1/mri/anatomy3_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025763/ses-1/mri/anatomy3_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wM/wg/MD5E-s126151--96928b17d98db0a63bfd765ef860a8f5.nii.gz/MD5E-s126151--96928b17d98db0a63bfd765ef860a8f5.nii.gz

SWU_4/sub-0025763/ses-1/mri/anon_misub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0g/5P/MD5E-s8456494--3f488d35a834efe8a40b76474b6d62e1.nii.gz/MD5E-s8456494--3f488d35a834efe8a40b76474b6d62e1.nii.gz

SWU_4/sub-0025763/ses-1/mri/anon_msub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/px/v2/MD5E-s8058949--b45d70287bd4e63ed573082805c7b862.nii.gz/MD5E-s8058949--b45d70287bd4e63ed573082805c7b862.nii.gz

SWU_4/sub-0025763/ses-1/mri/cat_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1f/wq/MD5E-s94654--0b65f7b4a09eea6fd28bc03f7135b81e.nii.gz/MD5E-s94654--0b65f7b4a09eea6fd28bc03f7135b81e.nii.gz

SWU_4/sub-0025763/ses-1/mri/cobra_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025763/ses-1/mri/cobra_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/Kk/MD5E-s45046--6aef13a280949a7cc093ff5eac48763b.nii.gz/MD5E-s45046--6aef13a280949a7cc093ff5eac48763b.nii.gz

SWU_4/sub-0025763/ses-1/mri/hammers_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025763/ses-1/mri/hammers_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/4G/MD5E-s137913--c6d6ea802d5cbf2dcbdbffd9c227b567.nii.gz/MD5E-s137913--c6d6ea802d5cbf2dcbdbffd9c227b567.nii.gz

SWU_4/sub-0025763/ses-1/mri/ibsr_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025763/ses-1/mri/ibsr_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/G6/MD5E-s145710--9e2f994e775a75c31740ac02102b6b4b.nii.gz/MD5E-s145710--9e2f994e775a75c31740ac02102b6b4b.nii.gz

SWU_4/sub-0025763/ses-1/mri/it_sub-0025763_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/XM/MD5E-s284--44b4757858d3d578486a4d42d571d5a7.mat/MD5E-s284--44b4757858d3d578486a4d42d571d5a7.mat

SWU_4/sub-0025763/ses-1/mri/it_sub-0025763_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/9X/MD5E-s284--4f4879a866439d4c56655be8d715e0b7.mat/MD5E-s284--4f4879a866439d4c56655be8d715e0b7.mat

SWU_4/sub-0025763/ses-1/mri/iy_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/48/MD5E-s41434424--2780db0d588b6bcb875ae6233be76244.nii.gz/MD5E-s41434424--2780db0d588b6bcb875ae6233be76244.nii.gz

SWU_4/sub-0025763/ses-1/mri/julichbrain_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025763/ses-1/mri/julichbrain_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/02/Xz/MD5E-s184185--70df1514c6a4ec41557477930029b789.nii.gz/MD5E-s184185--70df1514c6a4ec41557477930029b789.nii.gz

SWU_4/sub-0025763/ses-1/mri/lpba40_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025763/ses-1/mri/lpba40_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p6/V2/MD5E-s135055--26e79ad001683383a5c60421b73b416f.nii.gz/MD5E-s135055--26e79ad001683383a5c60421b73b416f.nii.gz

SWU_4/sub-0025763/ses-1/mri/m0wp1sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JV/jp/MD5E-s2592400--338f46e705c6da45c675280721ecf7bb.nii.gz/MD5E-s2592400--338f46e705c6da45c675280721ecf7bb.nii.gz

SWU_4/sub-0025763/ses-1/mri/m0wp2sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/p7/MD5E-s2320943--b1fcdb26e4ef3abdb84c45856296dd00.nii.gz/MD5E-s2320943--b1fcdb26e4ef3abdb84c45856296dd00.nii.gz

SWU_4/sub-0025763/ses-1/mri/m0wp3sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/3g/MD5E-s2483964--7b7ad53b826fbc3c873273d2cbf56375.nii.gz/MD5E-s2483964--7b7ad53b826fbc3c873273d2cbf56375.nii.gz

SWU_4/sub-0025763/ses-1/mri/mori_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025763/ses-1/mri/mori_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/FQ/MD5E-s161417--19f3b16751b41675338ac40dcacb9b2c.nii.gz/MD5E-s161417--19f3b16751b41675338ac40dcacb9b2c.nii.gz

SWU_4/sub-0025763/ses-1/mri/mwp1sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/Vz/MD5E-s2601537--be271acd73b4473523a979db4af22285.nii.gz/MD5E-s2601537--be271acd73b4473523a979db4af22285.nii.gz

SWU_4/sub-0025763/ses-1/mri/mwp2sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/63/MD5E-s2322511--013851c1c1c0f9a9338726fbde22d492.nii.gz/MD5E-s2322511--013851c1c1c0f9a9338726fbde22d492.nii.gz

SWU_4/sub-0025763/ses-1/mri/mwp3sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/05/jp/MD5E-s2480462--82bdc73d95f880a41324374660d84ef6.nii.gz/MD5E-s2480462--82bdc73d95f880a41324374660d84ef6.nii.gz

SWU_4/sub-0025763/ses-1/mri/neuromorphometrics_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025763/ses-1/mri/neuromorphometrics_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/2G/MD5E-s186521--6dbb3956414467b2fe45bbef80e1f2da.nii.gz/MD5E-s186521--6dbb3956414467b2fe45bbef80e1f2da.nii.gz

SWU_4/sub-0025763/ses-1/mri/p0sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/51/MD5E-s579046--9cb498a42891ab4aaab8a7ab55af3743.nii.gz/MD5E-s579046--9cb498a42891ab4aaab8a7ab55af3743.nii.gz

SWU_4/sub-0025763/ses-1/mri/p1sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/mV/MD5E-s616209--502b9e88b8a351710a33cef37913e150.nii.gz/MD5E-s616209--502b9e88b8a351710a33cef37913e150.nii.gz

SWU_4/sub-0025763/ses-1/mri/p2sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9Q/Mx/MD5E-s420892--d0637d7857e4c7f93d5470120a8c0495.nii.gz/MD5E-s420892--d0637d7857e4c7f93d5470120a8c0495.nii.gz

SWU_4/sub-0025763/ses-1/mri/p3sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025763/ses-1/mri/rp1sub-0025763_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/Vq/MD5E-s453845--d3e67fec13e5f8dc48e85414be63d8b9.nii.gz/MD5E-s453845--d3e67fec13e5f8dc48e85414be63d8b9.nii.gz

SWU_4/sub-0025763/ses-1/mri/rp2sub-0025763_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025763/ses-1/mri/rp3sub-0025763_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025763/ses-1/mri/t_sub-0025763_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025763/ses-1/mri/t_sub-0025763_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/vj/MD5E-s284--7308404cbeed965a38184b81b1bbe3e0.mat/MD5E-s284--7308404cbeed965a38184b81b1bbe3e0.mat

SWU_4/sub-0025763/ses-1/mri/thalamus_sub-0025763_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025763/ses-1/mri/thalamus_sub-0025763_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/W1/MD5E-s15935--0037dfa09de99d762cee09d8e6ef7723.nii.gz/MD5E-s15935--0037dfa09de99d762cee09d8e6ef7723.nii.gz

SWU_4/sub-0025763/ses-1/mri/wj_sub-0025763_ses-1_run-1_T1w.nii.gz

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