[DATALAD RUNCMD] Compute BNU_2/sub-0025921/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025921/ses-1/anat/sub-0025921_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025921/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025921/ses-1/label/catROI_sub-0025921_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WZ/JP/MD5E-s57889--3db1a3682d38f0b6f2e303127d45386a.mat/MD5E-s57889--3db1a3682d38f0b6f2e303127d45386a.mat

BNU_2/sub-0025921/ses-1/label/catROI_sub-0025921_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/8p/MD5E-s188889--370696021f3b8391d21bad0408b4b388.xml/MD5E-s188889--370696021f3b8391d21bad0408b4b388.xml

BNU_2/sub-0025921/ses-1/label/catROIs_sub-0025921_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fX/79/MD5E-s120140--69149375dd82c33629651a9711384a5e.mat/MD5E-s120140--69149375dd82c33629651a9711384a5e.mat

BNU_2/sub-0025921/ses-1/label/catROIs_sub-0025921_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/jj/MD5E-s332080--0bde48af46793cc9cb81d06750c90afa.xml/MD5E-s332080--0bde48af46793cc9cb81d06750c90afa.xml

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XG/kg/MD5E-s142628--f396f9ad4df6706745f0d595ddbc43c6.nii.gz/MD5E-s142628--f396f9ad4df6706745f0d595ddbc43c6.nii.gz

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PV/Kz/MD5E-s157203--a202e665bd7a4b7a2de015d7ad87154c.nii.gz/MD5E-s157203--a202e665bd7a4b7a2de015d7ad87154c.nii.gz

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/5G/MD5E-s211611--8c4edd81ade71614bd93d292ef4e32dd.nii.gz/MD5E-s211611--8c4edd81ade71614bd93d292ef4e32dd.nii.gz

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025921/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/48/MD5E-s233309--9f1cd2fb5dcb03b8d51b17d98f71532b.nii.gz/MD5E-s233309--9f1cd2fb5dcb03b8d51b17d98f71532b.nii.gz

BNU_2/sub-0025921/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025921/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/Mk/MD5E-s18470--72a5ec5ac4f9986e0b19b75db9077377.nii.gz/MD5E-s18470--72a5ec5ac4f9986e0b19b75db9077377.nii.gz

BNU_2/sub-0025921/ses-1/mri/aal3_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025921/ses-1/mri/aal3_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/Qm/MD5E-s158441--06ebf7a8dfaed038ad740ae10e4a35a3.nii.gz/MD5E-s158441--06ebf7a8dfaed038ad740ae10e4a35a3.nii.gz

BNU_2/sub-0025921/ses-1/mri/anatomy3_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025921/ses-1/mri/anatomy3_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/35/63/MD5E-s114353--1bd5c6328f3f10ab45de61454a342e8b.nii.gz/MD5E-s114353--1bd5c6328f3f10ab45de61454a342e8b.nii.gz

BNU_2/sub-0025921/ses-1/mri/anon_misub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/12/M2/MD5E-s3646041--7102fc88dc298d9a064aac42b30029b9.nii.gz/MD5E-s3646041--7102fc88dc298d9a064aac42b30029b9.nii.gz

BNU_2/sub-0025921/ses-1/mri/anon_msub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/Gk/MD5E-s6627955--99cf02a7751d7500d5246fc5c71b6e8f.nii.gz/MD5E-s6627955--99cf02a7751d7500d5246fc5c71b6e8f.nii.gz

BNU_2/sub-0025921/ses-1/mri/cat_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pw/g1/MD5E-s82294--b243a38fe34090953b00d227c04bb70e.nii.gz/MD5E-s82294--b243a38fe34090953b00d227c04bb70e.nii.gz

BNU_2/sub-0025921/ses-1/mri/cobra_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025921/ses-1/mri/cobra_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/Kk/MD5E-s39544--c69db4f02bc874f5823b7480ff43b40a.nii.gz/MD5E-s39544--c69db4f02bc874f5823b7480ff43b40a.nii.gz

BNU_2/sub-0025921/ses-1/mri/hammers_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025921/ses-1/mri/hammers_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/QW/MD5E-s125829--a691089476c512853a27b2bccfdde336.nii.gz/MD5E-s125829--a691089476c512853a27b2bccfdde336.nii.gz

BNU_2/sub-0025921/ses-1/mri/ibsr_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025921/ses-1/mri/ibsr_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/qg/MD5E-s131887--80c1485eb33d05ce69d378073d8b864b.nii.gz/MD5E-s131887--80c1485eb33d05ce69d378073d8b864b.nii.gz

BNU_2/sub-0025921/ses-1/mri/it_sub-0025921_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/fk/MD5E-s283--c52ba26b33ac67bd49b1c086c2ccfe13.mat/MD5E-s283--c52ba26b33ac67bd49b1c086c2ccfe13.mat

BNU_2/sub-0025921/ses-1/mri/it_sub-0025921_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/gg/MD5E-s284--096d837a7c529d6e13d8950408ecd619.mat/MD5E-s284--096d837a7c529d6e13d8950408ecd619.mat

BNU_2/sub-0025921/ses-1/mri/iy_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/km/VK/MD5E-s32628830--1e942d36a0cfe02ad694ea5aed69192a.nii.gz/MD5E-s32628830--1e942d36a0cfe02ad694ea5aed69192a.nii.gz

BNU_2/sub-0025921/ses-1/mri/julichbrain_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025921/ses-1/mri/julichbrain_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/F9/MD5E-s168524--e458d891773ffe43950734e30179cb3d.nii.gz/MD5E-s168524--e458d891773ffe43950734e30179cb3d.nii.gz

BNU_2/sub-0025921/ses-1/mri/lpba40_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025921/ses-1/mri/lpba40_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7P/Zx/MD5E-s124037--0061ee9dc892157082e3292e582a3c2a.nii.gz/MD5E-s124037--0061ee9dc892157082e3292e582a3c2a.nii.gz

BNU_2/sub-0025921/ses-1/mri/m0wp1sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jK/J3/MD5E-s2584225--37e4831fa5997d32aeff852a6c8ffcdf.nii.gz/MD5E-s2584225--37e4831fa5997d32aeff852a6c8ffcdf.nii.gz

BNU_2/sub-0025921/ses-1/mri/m0wp2sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/z6/MD5E-s2271750--070edd19a107a5bc014aa65c778e389f.nii.gz/MD5E-s2271750--070edd19a107a5bc014aa65c778e389f.nii.gz

BNU_2/sub-0025921/ses-1/mri/m0wp3sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/7G/MD5E-s2476463--1b1cff6e6e407e177518bae5d162fc54.nii.gz/MD5E-s2476463--1b1cff6e6e407e177518bae5d162fc54.nii.gz

BNU_2/sub-0025921/ses-1/mri/mori_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025921/ses-1/mri/mori_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/0F/MD5E-s147278--426290b3ce6795c85311f00540d5df1d.nii.gz/MD5E-s147278--426290b3ce6795c85311f00540d5df1d.nii.gz

BNU_2/sub-0025921/ses-1/mri/mwp1sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/vP/MD5E-s2589565--06fc793d1d8b83cd39c87459300e5597.nii.gz/MD5E-s2589565--06fc793d1d8b83cd39c87459300e5597.nii.gz

BNU_2/sub-0025921/ses-1/mri/mwp2sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/F6/MD5E-s2270252--02e8f007fcd9c8376bf80b7e4de19a79.nii.gz/MD5E-s2270252--02e8f007fcd9c8376bf80b7e4de19a79.nii.gz

BNU_2/sub-0025921/ses-1/mri/mwp3sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/5M/MD5E-s2473155--b7344549364caf20e9795c7b83ba01ef.nii.gz/MD5E-s2473155--b7344549364caf20e9795c7b83ba01ef.nii.gz

BNU_2/sub-0025921/ses-1/mri/neuromorphometrics_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025921/ses-1/mri/neuromorphometrics_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/w2/MD5E-s171700--3b084b1ecb48494d1df64e320180c52f.nii.gz/MD5E-s171700--3b084b1ecb48494d1df64e320180c52f.nii.gz

BNU_2/sub-0025921/ses-1/mri/p0sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/JV/MD5E-s698457--69bbdaf29a7a4c9313d1569476ab9cd1.nii.gz/MD5E-s698457--69bbdaf29a7a4c9313d1569476ab9cd1.nii.gz

BNU_2/sub-0025921/ses-1/mri/p1sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/pZ/MD5E-s716682--ea764aedc41c18a259b1d2dba9b40cf7.nii.gz/MD5E-s716682--ea764aedc41c18a259b1d2dba9b40cf7.nii.gz

BNU_2/sub-0025921/ses-1/mri/p2sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J8/Q2/MD5E-s484371--b636b6ad726bf59822ef963ef7e4d511.nii.gz/MD5E-s484371--b636b6ad726bf59822ef963ef7e4d511.nii.gz

BNU_2/sub-0025921/ses-1/mri/p3sub-0025921_ses-1_run-1_T1w.nii.gz

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BNU_2/sub-0025921/ses-1/mri/rp1sub-0025921_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025921/ses-1/mri/rp2sub-0025921_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025921/ses-1/mri/rp3sub-0025921_ses-1_run-1_T1w_affine.nii.gz

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BNU_2/sub-0025921/ses-1/mri/t_sub-0025921_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/z4/MD5E-s283--0e662656cbafbf69873b58b1ab5e5019.mat/MD5E-s283--0e662656cbafbf69873b58b1ab5e5019.mat

BNU_2/sub-0025921/ses-1/mri/t_sub-0025921_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/2k/MD5E-s284--ec18b6897875b3b122f733302ebbe70f.mat/MD5E-s284--ec18b6897875b3b122f733302ebbe70f.mat

BNU_2/sub-0025921/ses-1/mri/thalamus_sub-0025921_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025921/ses-1/mri/thalamus_sub-0025921_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/Mg/MD5E-s12340--3a322ace6bb2a9dc49682660c8f0937a.nii.gz/MD5E-s12340--3a322ace6bb2a9dc49682660c8f0937a.nii.gz

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