[DATALAD RUNCMD] Compute NYU_2/sub-0025027/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025027/ses-2/anat/sub-0025027_ses-2_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025027/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025027/ses-2/label/catROI_sub-0025027_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Wq/3v/MD5E-s58062--7fa2bde15381c2e5912cc86e524603a1.mat/MD5E-s58062--7fa2bde15381c2e5912cc86e524603a1.mat

NYU_2/sub-0025027/ses-2/label/catROI_sub-0025027_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gp/FJ/MD5E-s188918--d45e2d34863bcd9a992838ad5430cac3.xml/MD5E-s188918--d45e2d34863bcd9a992838ad5430cac3.xml

NYU_2/sub-0025027/ses-2/label/catROI_sub-0025027_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/22/MD5E-s58212--9bc357c9df780ec185b498be84d1a5c7.mat/MD5E-s58212--9bc357c9df780ec185b498be84d1a5c7.mat

NYU_2/sub-0025027/ses-2/label/catROI_sub-0025027_ses-2_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/3q/MD5E-s188963--a4c1e0daf70e5e727f4911113399c280.xml/MD5E-s188963--a4c1e0daf70e5e727f4911113399c280.xml

NYU_2/sub-0025027/ses-2/label/catROIs_sub-0025027_ses-2_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gp/Qm/MD5E-s120206--2f4cd876cafbe9052e18f68d5839779d.mat/MD5E-s120206--2f4cd876cafbe9052e18f68d5839779d.mat

NYU_2/sub-0025027/ses-2/label/catROIs_sub-0025027_ses-2_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kx/mZ/MD5E-s332113--a1946469460fcdda432c45cc863f89bf.xml/MD5E-s332113--a1946469460fcdda432c45cc863f89bf.xml

NYU_2/sub-0025027/ses-2/label/catROIs_sub-0025027_ses-2_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/gF/MD5E-s120180--5079658a32bf3354b1d92264081e4ea1.mat/MD5E-s120180--5079658a32bf3354b1d92264081e4ea1.mat

NYU_2/sub-0025027/ses-2/label/catROIs_sub-0025027_ses-2_run-2_T1w.xml

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+../../../../.git/annex/objects/m8/mQ/MD5E-s332231--1d6f0c22db59935b5465b8e9bb8c0329.xml/MD5E-s332231--1d6f0c22db59935b5465b8e9bb8c0329.xml

NYU_2/sub-0025027/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/31/Pv/MD5E-s148511--624a76ff24863de18596f2aae95556f0.nii.gz/MD5E-s148511--624a76ff24863de18596f2aae95556f0.nii.gz

NYU_2/sub-0025027/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025027/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0g/JW/MD5E-s164576--1f43a5ed207b2d6013e39fd7d0016a8a.nii.gz/MD5E-s164576--1f43a5ed207b2d6013e39fd7d0016a8a.nii.gz

NYU_2/sub-0025027/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/8v/MD5E-s164054--989551a103b3aa0f47c5cbf32ba6af86.nii.gz/MD5E-s164054--989551a103b3aa0f47c5cbf32ba6af86.nii.gz

NYU_2/sub-0025027/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025027/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/VK/MD5E-s243992--0224823822d714e39559d3542177b6e3.nii.gz/MD5E-s243992--0224823822d714e39559d3542177b6e3.nii.gz

NYU_2/sub-0025027/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/JG/MD5E-s19193--97e86f3249c6319805e270446ac9a1bf.nii.gz/MD5E-s19193--97e86f3249c6319805e270446ac9a1bf.nii.gz

NYU_2/sub-0025027/ses-2/mri/aal3_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/aal3_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/v8/MD5E-s167644--49f32594c98ee1841f189c01e1c4b83f.nii.gz/MD5E-s167644--49f32594c98ee1841f189c01e1c4b83f.nii.gz

NYU_2/sub-0025027/ses-2/mri/anatomy3_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/anatomy3_sub-0025027_ses-2_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/jG/MD5E-s115925--86113cd005fa7b2aa9a3532ead48824f.nii.gz/MD5E-s115925--86113cd005fa7b2aa9a3532ead48824f.nii.gz

NYU_2/sub-0025027/ses-2/mri/anon_misub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/anon_misub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/anon_msub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/anon_msub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/cat_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/cat_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/cobra_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/cobra_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/hammers_sub-0025027_ses-2_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/hammers_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/ibsr_sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/ibsr_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/it_sub-0025027_ses-2_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025027/ses-2/mri/it_sub-0025027_ses-2_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025027/ses-2/mri/it_sub-0025027_ses-2_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025027/ses-2/mri/it_sub-0025027_ses-2_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025027/ses-2/mri/iy_sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/iy_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/julichbrain_sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/julichbrain_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/lpba40_sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/lpba40_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp1sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp1sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp2sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp2sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp3sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/m0wp3sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/mori_sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/mori_sub-0025027_ses-2_run-2_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/mwp1sub-0025027_ses-2_run-1_T1w.nii.gz

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NYU_2/sub-0025027/ses-2/mri/mwp1sub-0025027_ses-2_run-2_T1w.nii.gz

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