[DATALAD RUNCMD] Compute SWU_4/sub-0025842/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025842/ses-2/anat/sub-0025842_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025842/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025842/ses-2/label/catROI_sub-0025842_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/KP/MD5E-s61167--103f3d695db1d844fd7f70c174778163.mat/MD5E-s61167--103f3d695db1d844fd7f70c174778163.mat

SWU_4/sub-0025842/ses-2/label/catROI_sub-0025842_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/JK/MD5E-s188931--9842a8fb6e5fbce90d6da3c3d67f682c.xml/MD5E-s188931--9842a8fb6e5fbce90d6da3c3d67f682c.xml

SWU_4/sub-0025842/ses-2/label/catROIs_sub-0025842_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/Fp/MD5E-s120047--aa63015aeb66c613116908d21fd7bb1f.mat/MD5E-s120047--aa63015aeb66c613116908d21fd7bb1f.mat

SWU_4/sub-0025842/ses-2/label/catROIs_sub-0025842_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v9/WZ/MD5E-s332214--206855b35f5fc44adac622f4512806c3.xml/MD5E-s332214--206855b35f5fc44adac622f4512806c3.xml

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K7/72/MD5E-s153903--4166a2947867f3f152a9f5cce0056978.nii.gz/MD5E-s153903--4166a2947867f3f152a9f5cce0056978.nii.gz

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/X5/MD5E-s174479--ab87f05cb085c7db3e77d50689e61af9.nii.gz/MD5E-s174479--ab87f05cb085c7db3e77d50689e61af9.nii.gz

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/x8/MD5E-s233955--aa403f263e39b13b2bbf555434cf91bb.nii.gz/MD5E-s233955--aa403f263e39b13b2bbf555434cf91bb.nii.gz

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025842/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/7W/MD5E-s261161--28f73d563721a1fc0ac9f43b1bf82a9c.nii.gz/MD5E-s261161--28f73d563721a1fc0ac9f43b1bf82a9c.nii.gz

SWU_4/sub-0025842/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025842/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/PW/MD5E-s24549--efc4483ed1a02aa156585b82cabda2a9.nii.gz/MD5E-s24549--efc4483ed1a02aa156585b82cabda2a9.nii.gz

SWU_4/sub-0025842/ses-2/mri/aal3_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025842/ses-2/mri/aal3_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/Q6/MD5E-s177968--d2a992a78a2d4f9c556e6879c7c29999.nii.gz/MD5E-s177968--d2a992a78a2d4f9c556e6879c7c29999.nii.gz

SWU_4/sub-0025842/ses-2/mri/anatomy3_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025842/ses-2/mri/anatomy3_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JX/59/MD5E-s128003--cb9949106557d269d9885e6986bd2817.nii.gz/MD5E-s128003--cb9949106557d269d9885e6986bd2817.nii.gz

SWU_4/sub-0025842/ses-2/mri/anon_misub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/7P/MD5E-s8856099--3f592a6a688fad1854cdc1a25817b713.nii.gz/MD5E-s8856099--3f592a6a688fad1854cdc1a25817b713.nii.gz

SWU_4/sub-0025842/ses-2/mri/anon_msub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/FK/MD5E-s8918357--a52302c9320a0df85999f629e642e367.nii.gz/MD5E-s8918357--a52302c9320a0df85999f629e642e367.nii.gz

SWU_4/sub-0025842/ses-2/mri/cat_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/9Q/MD5E-s93225--4676612a69fd1318869f0c7358d633bf.nii.gz/MD5E-s93225--4676612a69fd1318869f0c7358d633bf.nii.gz

SWU_4/sub-0025842/ses-2/mri/cobra_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025842/ses-2/mri/cobra_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/K7/MD5E-s46574--38e48532e9be370cac5429b136a0f3a4.nii.gz/MD5E-s46574--38e48532e9be370cac5429b136a0f3a4.nii.gz

SWU_4/sub-0025842/ses-2/mri/hammers_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025842/ses-2/mri/hammers_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2k/4M/MD5E-s137920--ae0ce6386beec741c99a1d4b04174266.nii.gz/MD5E-s137920--ae0ce6386beec741c99a1d4b04174266.nii.gz

SWU_4/sub-0025842/ses-2/mri/ibsr_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025842/ses-2/mri/ibsr_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/JP/MD5E-s147280--74c3ccd3ba771e88c997902f33a187c3.nii.gz/MD5E-s147280--74c3ccd3ba771e88c997902f33a187c3.nii.gz

SWU_4/sub-0025842/ses-2/mri/it_sub-0025842_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/PJ/MD5E-s284--84013037fa711620d5b610f332b6e2c8.mat/MD5E-s284--84013037fa711620d5b610f332b6e2c8.mat

SWU_4/sub-0025842/ses-2/mri/it_sub-0025842_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/Vk/MD5E-s284--d1f9b5e4e82214ff8ab9eb02e1921b2c.mat/MD5E-s284--d1f9b5e4e82214ff8ab9eb02e1921b2c.mat

SWU_4/sub-0025842/ses-2/mri/iy_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KP/8q/MD5E-s41828304--bdab01bf7a16715146e77881d36f8464.nii.gz/MD5E-s41828304--bdab01bf7a16715146e77881d36f8464.nii.gz

SWU_4/sub-0025842/ses-2/mri/julichbrain_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025842/ses-2/mri/julichbrain_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/F1/MD5E-s185907--bb2e455e9ba71ea4bc58dec62f21d276.nii.gz/MD5E-s185907--bb2e455e9ba71ea4bc58dec62f21d276.nii.gz

SWU_4/sub-0025842/ses-2/mri/lpba40_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025842/ses-2/mri/lpba40_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8f/gm/MD5E-s136099--02264fce91d4754249378f3b8d87d536.nii.gz/MD5E-s136099--02264fce91d4754249378f3b8d87d536.nii.gz

SWU_4/sub-0025842/ses-2/mri/m0wp1sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qw/J4/MD5E-s2577826--1623e47316b4904b517bddc3c967719f.nii.gz/MD5E-s2577826--1623e47316b4904b517bddc3c967719f.nii.gz

SWU_4/sub-0025842/ses-2/mri/m0wp2sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/x4/MD5E-s2299414--972c532845017a8b3ff2c48617ddc262.nii.gz/MD5E-s2299414--972c532845017a8b3ff2c48617ddc262.nii.gz

SWU_4/sub-0025842/ses-2/mri/m0wp3sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/VJ/MD5E-s2513729--b922e21b4a6d8e19fc6e551fa0b5d980.nii.gz/MD5E-s2513729--b922e21b4a6d8e19fc6e551fa0b5d980.nii.gz

SWU_4/sub-0025842/ses-2/mri/mori_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025842/ses-2/mri/mori_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JP/ZP/MD5E-s162453--14d911e330eb12f9638039fa9e65c3c2.nii.gz/MD5E-s162453--14d911e330eb12f9638039fa9e65c3c2.nii.gz

SWU_4/sub-0025842/ses-2/mri/mwp1sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/Qm/MD5E-s2588656--d6e1cef7d787b08987eccfb204b22c5a.nii.gz/MD5E-s2588656--d6e1cef7d787b08987eccfb204b22c5a.nii.gz

SWU_4/sub-0025842/ses-2/mri/mwp2sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gw/F1/MD5E-s2303377--82ac153d3c3e7bba2ef7840d415b127b.nii.gz/MD5E-s2303377--82ac153d3c3e7bba2ef7840d415b127b.nii.gz

SWU_4/sub-0025842/ses-2/mri/mwp3sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/k1/MD5E-s2511335--8df70bce6dbcf170714f856d30bf63b1.nii.gz/MD5E-s2511335--8df70bce6dbcf170714f856d30bf63b1.nii.gz

SWU_4/sub-0025842/ses-2/mri/neuromorphometrics_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025842/ses-2/mri/neuromorphometrics_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gp/Qg/MD5E-s187743--db02710c2ac293255fad0ed9ccf022c1.nii.gz/MD5E-s187743--db02710c2ac293255fad0ed9ccf022c1.nii.gz

SWU_4/sub-0025842/ses-2/mri/p0sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/Q1/MD5E-s580033--76aca03a5602b31184314933cfff0131.nii.gz/MD5E-s580033--76aca03a5602b31184314933cfff0131.nii.gz

SWU_4/sub-0025842/ses-2/mri/p1sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w6/55/MD5E-s617687--45b392b6b8c186bba906c5e786a98b91.nii.gz/MD5E-s617687--45b392b6b8c186bba906c5e786a98b91.nii.gz

SWU_4/sub-0025842/ses-2/mri/p2sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kk/zg/MD5E-s403693--cf4e84c6cd339dcdc03663cd1ee38e95.nii.gz/MD5E-s403693--cf4e84c6cd339dcdc03663cd1ee38e95.nii.gz

SWU_4/sub-0025842/ses-2/mri/p3sub-0025842_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025842/ses-2/mri/rp1sub-0025842_ses-2_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/1q/MD5E-s453732--8ecaa9f981d212a97e6a296c9fc243df.nii.gz/MD5E-s453732--8ecaa9f981d212a97e6a296c9fc243df.nii.gz

SWU_4/sub-0025842/ses-2/mri/rp2sub-0025842_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025842/ses-2/mri/rp3sub-0025842_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025842/ses-2/mri/t_sub-0025842_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025842/ses-2/mri/t_sub-0025842_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/qQ/MD5E-s284--214c443b91407afb7c03ec220ff98a7a.mat/MD5E-s284--214c443b91407afb7c03ec220ff98a7a.mat

SWU_4/sub-0025842/ses-2/mri/thalamus_sub-0025842_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025842/ses-2/mri/thalamus_sub-0025842_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025842/ses-2/mri/wj_sub-0025842_ses-2_run-1_T1w.nii.gz

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