[DATALAD RUNCMD] Compute SWU_1/sub-0027203/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027203/ses-3/anat/sub-0027203_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027203/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027203/ses-3/label/catROI_sub-0027203_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/xg/MD5E-s61284--977f7fed5b1451c3f454732e7e307e48.mat/MD5E-s61284--977f7fed5b1451c3f454732e7e307e48.mat

SWU_1/sub-0027203/ses-3/label/catROI_sub-0027203_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/q0/MD5E-s188800--307694b8674d97fcf8fa751e8393ff3c.xml/MD5E-s188800--307694b8674d97fcf8fa751e8393ff3c.xml

SWU_1/sub-0027203/ses-3/label/catROI_sub-0027203_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mm/gZ/MD5E-s61295--2c18a359e3bce17c3e3f2bac3608eadc.mat/MD5E-s61295--2c18a359e3bce17c3e3f2bac3608eadc.mat

SWU_1/sub-0027203/ses-3/label/catROI_sub-0027203_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JV/z4/MD5E-s188777--1a94bde92c19c4facca3610ebdb33464.xml/MD5E-s188777--1a94bde92c19c4facca3610ebdb33464.xml

SWU_1/sub-0027203/ses-3/label/catROIs_sub-0027203_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gq/3F/MD5E-s120083--0eda5a4c425da2e524dc96d5f3c134c5.mat/MD5E-s120083--0eda5a4c425da2e524dc96d5f3c134c5.mat

SWU_1/sub-0027203/ses-3/label/catROIs_sub-0027203_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/g4/MD5E-s332159--30e39eaea7bee4a338295339ac8695e2.xml/MD5E-s332159--30e39eaea7bee4a338295339ac8695e2.xml

SWU_1/sub-0027203/ses-3/label/catROIs_sub-0027203_ses-3_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/0P/9X/MD5E-s120146--7120311181a32c2804d92617ed55e84c.mat/MD5E-s120146--7120311181a32c2804d92617ed55e84c.mat

SWU_1/sub-0027203/ses-3/label/catROIs_sub-0027203_ses-3_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/77/zF/MD5E-s332138--c98f789e92695c33712d1a9705ccb915.xml/MD5E-s332138--c98f789e92695c33712d1a9705ccb915.xml

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/M1/MD5E-s179292--26bd49a1693960180dc8837f581f2334.nii.gz/MD5E-s179292--26bd49a1693960180dc8837f581f2334.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/xJ/3f/MD5E-s178753--54afd673a51bf98d924e9cbe1f740392.nii.gz/MD5E-s178753--54afd673a51bf98d924e9cbe1f740392.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M9/JK/MD5E-s200168--effc4aa3943a6cb73ab7427d992bdfab.nii.gz/MD5E-s200168--effc4aa3943a6cb73ab7427d992bdfab.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/G6/f1/MD5E-s199799--867f06606361f1ed3e93a14949348dd6.nii.gz/MD5E-s199799--867f06606361f1ed3e93a14949348dd6.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/Xx/MD5E-s268226--4ae8208d6354763eedfb3e3cca0cb66a.nii.gz/MD5E-s268226--4ae8208d6354763eedfb3e3cca0cb66a.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Zk/7W/MD5E-s267723--97053e3ce25957482628c9b5c1d52eb3.nii.gz/MD5E-s267723--97053e3ce25957482628c9b5c1d52eb3.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pW/2f/MD5E-s297565--080caf49ce6778bf1daafe3584c29fca.nii.gz/MD5E-s297565--080caf49ce6778bf1daafe3584c29fca.nii.gz

SWU_1/sub-0027203/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7p/zG/MD5E-s297555--aae37db480ac65f2415be424e8faeb74.nii.gz/MD5E-s297555--aae37db480ac65f2415be424e8faeb74.nii.gz

SWU_1/sub-0027203/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/zx/MD5E-s25712--6116eb538c7098bdf9bceba8a4bff146.nii.gz/MD5E-s25712--6116eb538c7098bdf9bceba8a4bff146.nii.gz

SWU_1/sub-0027203/ses-3/mri/Tian_Subcortex_S2_7T_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jk/Wv/MD5E-s25871--7f05c81ee300658b712561aad265eebc.nii.gz/MD5E-s25871--7f05c81ee300658b712561aad265eebc.nii.gz

SWU_1/sub-0027203/ses-3/mri/aal3_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/19/MD5E-s200280--031461bdb2d088c12a64aa737f696f84.nii.gz/MD5E-s200280--031461bdb2d088c12a64aa737f696f84.nii.gz

SWU_1/sub-0027203/ses-3/mri/aal3_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jg/1K/MD5E-s201143--3f19ae47114d83918ae96e3d4781a43a.nii.gz/MD5E-s201143--3f19ae47114d83918ae96e3d4781a43a.nii.gz

SWU_1/sub-0027203/ses-3/mri/anatomy3_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p3/05/MD5E-s146741--35dba2e7fb669cf849ab7bb81586fc7c.nii.gz/MD5E-s146741--35dba2e7fb669cf849ab7bb81586fc7c.nii.gz

SWU_1/sub-0027203/ses-3/mri/anatomy3_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GX/44/MD5E-s146737--3c8f32762d53f9dad8bc5afaee446904.nii.gz/MD5E-s146737--3c8f32762d53f9dad8bc5afaee446904.nii.gz

SWU_1/sub-0027203/ses-3/mri/anon_misub-0027203_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/zm/9M/MD5E-s8736492--2ed7c3ab2f77ac75f2944168fbb2cb11.nii.gz/MD5E-s8736492--2ed7c3ab2f77ac75f2944168fbb2cb11.nii.gz

SWU_1/sub-0027203/ses-3/mri/anon_misub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/53/Mx/MD5E-s8735875--1f4dfa8833004994d65bab1ed5d6b496.nii.gz/MD5E-s8735875--1f4dfa8833004994d65bab1ed5d6b496.nii.gz

SWU_1/sub-0027203/ses-3/mri/anon_msub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/anon_msub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/65/GM/MD5E-s8417348--0a98ee218e0c2aeb365f9d9c51e86034.nii.gz/MD5E-s8417348--0a98ee218e0c2aeb365f9d9c51e86034.nii.gz

SWU_1/sub-0027203/ses-3/mri/cat_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/22/MD5E-s107710--ed9289530e7a0d17298e7c1fda64d721.nii.gz/MD5E-s107710--ed9289530e7a0d17298e7c1fda64d721.nii.gz

SWU_1/sub-0027203/ses-3/mri/cat_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MM/KP/MD5E-s107687--cc8e41f8280f5aa96ee16c0011de221a.nii.gz/MD5E-s107687--cc8e41f8280f5aa96ee16c0011de221a.nii.gz

SWU_1/sub-0027203/ses-3/mri/cobra_sub-0027203_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/zF/MD5E-s51655--b3d2a982c989625fe9618cbf93c2aced.nii.gz/MD5E-s51655--b3d2a982c989625fe9618cbf93c2aced.nii.gz

SWU_1/sub-0027203/ses-3/mri/cobra_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/hammers_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/hammers_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/ibsr_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/ibsr_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/it_sub-0027203_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qW/kV/MD5E-s284--6c3186b4bd9059b0d80afc1b75a8a008.mat/MD5E-s284--6c3186b4bd9059b0d80afc1b75a8a008.mat

SWU_1/sub-0027203/ses-3/mri/it_sub-0027203_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027203/ses-3/mri/it_sub-0027203_ses-3_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/it_sub-0027203_ses-3_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/iy_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/iy_sub-0027203_ses-3_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027203/ses-3/mri/julichbrain_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/julichbrain_sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/lpba40_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/lpba40_sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp1sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp1sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp2sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp2sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp3sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/m0wp3sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/mori_sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/mori_sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/mwp1sub-0027203_ses-3_run-1_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/mwp1sub-0027203_ses-3_run-2_T1w.nii.gz

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SWU_1/sub-0027203/ses-3/mri/mwp2sub-0027203_ses-3_run-1_T1w.nii.gz

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