[DATALAD RUNCMD] Compute LMU_1/sub-0025355/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025355/ses-1/anat/sub-0025355_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025355/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025355/ses-1/label/catROI_sub-0025355_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/88/MD5E-s57743--3510acf18bd9dcefca01fdc864b7d51f.mat/MD5E-s57743--3510acf18bd9dcefca01fdc864b7d51f.mat

LMU_1/sub-0025355/ses-1/label/catROI_sub-0025355_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P0/74/MD5E-s188964--6d080cb1a78f104d1ee5c437a58296e2.xml/MD5E-s188964--6d080cb1a78f104d1ee5c437a58296e2.xml

LMU_1/sub-0025355/ses-1/label/catROIs_sub-0025355_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/8g/MD5E-s119939--07b08423b1c0909ef2828b852a9ab49a.mat/MD5E-s119939--07b08423b1c0909ef2828b852a9ab49a.mat

LMU_1/sub-0025355/ses-1/label/catROIs_sub-0025355_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/v4/MD5E-s332144--cfe6a618a2cc044101bdacfcf748f3ab.xml/MD5E-s332144--cfe6a618a2cc044101bdacfcf748f3ab.xml

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/K5/MD5E-s209696--62fe395a8fc9fe92f361d2306aa41d50.nii.gz/MD5E-s209696--62fe395a8fc9fe92f361d2306aa41d50.nii.gz

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3P/j5/MD5E-s233264--66d96c768298741d7a1ed73253d2c4be.nii.gz/MD5E-s233264--66d96c768298741d7a1ed73253d2c4be.nii.gz

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0X/gM/MD5E-s300033--c276a860061e7d880a09fea82803242c.nii.gz/MD5E-s300033--c276a860061e7d880a09fea82803242c.nii.gz

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025355/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/4f/MD5E-s332478--ce62803b6d1c3984ae2dbb7d0f628a7c.nii.gz/MD5E-s332478--ce62803b6d1c3984ae2dbb7d0f628a7c.nii.gz

LMU_1/sub-0025355/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025355/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vW/P1/MD5E-s30307--9cdb806ab14e3d7e70ebc51f4939e68f.nii.gz/MD5E-s30307--9cdb806ab14e3d7e70ebc51f4939e68f.nii.gz

LMU_1/sub-0025355/ses-1/mri/aal3_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025355/ses-1/mri/aal3_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/gm/MD5E-s240201--99519e86bb3391cb1602c8dd0eb52f99.nii.gz/MD5E-s240201--99519e86bb3391cb1602c8dd0eb52f99.nii.gz

LMU_1/sub-0025355/ses-1/mri/anatomy3_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025355/ses-1/mri/anatomy3_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/kF/MD5E-s170272--fc45c5598f68587150e3bfacd8b03dac.nii.gz/MD5E-s170272--fc45c5598f68587150e3bfacd8b03dac.nii.gz

LMU_1/sub-0025355/ses-1/mri/anon_misub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/g7/MD5E-s6171914--9b247f9744ad19dbac43745da3738467.nii.gz/MD5E-s6171914--9b247f9744ad19dbac43745da3738467.nii.gz

LMU_1/sub-0025355/ses-1/mri/anon_msub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/0f/MD5E-s12917608--fa41a4c3ed00c7717b03b860b07d494a.nii.gz/MD5E-s12917608--fa41a4c3ed00c7717b03b860b07d494a.nii.gz

LMU_1/sub-0025355/ses-1/mri/cat_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qJ/8X/MD5E-s131517--b2733161c1c730d39b4038c55545e234.nii.gz/MD5E-s131517--b2733161c1c730d39b4038c55545e234.nii.gz

LMU_1/sub-0025355/ses-1/mri/cobra_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025355/ses-1/mri/cobra_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VX/K9/MD5E-s62845--9675cc39072a17fa880dafec84ce6327.nii.gz/MD5E-s62845--9675cc39072a17fa880dafec84ce6327.nii.gz

LMU_1/sub-0025355/ses-1/mri/hammers_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025355/ses-1/mri/hammers_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/jz/MD5E-s186113--da4fefcdf597253ca797087f93ef57fc.nii.gz/MD5E-s186113--da4fefcdf597253ca797087f93ef57fc.nii.gz

LMU_1/sub-0025355/ses-1/mri/ibsr_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025355/ses-1/mri/ibsr_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q2/G7/MD5E-s196524--4a8c1ee1d9930be497ca0680cd21f3c0.nii.gz/MD5E-s196524--4a8c1ee1d9930be497ca0680cd21f3c0.nii.gz

LMU_1/sub-0025355/ses-1/mri/it_sub-0025355_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X7/Mm/MD5E-s282--fd2289d69efd62fb4aa09f7d261cc674.mat/MD5E-s282--fd2289d69efd62fb4aa09f7d261cc674.mat

LMU_1/sub-0025355/ses-1/mri/it_sub-0025355_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j4/03/MD5E-s283--c86f5c08e1c86f0acab9ea8c104bd578.mat/MD5E-s283--c86f5c08e1c86f0acab9ea8c104bd578.mat

LMU_1/sub-0025355/ses-1/mri/iy_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z5/6Z/MD5E-s56347477--824a15c63aa1f2a67d518b9068c296c6.nii.gz/MD5E-s56347477--824a15c63aa1f2a67d518b9068c296c6.nii.gz

LMU_1/sub-0025355/ses-1/mri/julichbrain_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025355/ses-1/mri/julichbrain_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3m/m1/MD5E-s250746--6b44f349d68b3a9ff13fcd57933c8005.nii.gz/MD5E-s250746--6b44f349d68b3a9ff13fcd57933c8005.nii.gz

LMU_1/sub-0025355/ses-1/mri/lpba40_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025355/ses-1/mri/lpba40_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k2/X3/MD5E-s185136--9f444f2f20a80c88766cbf6170b22f1d.nii.gz/MD5E-s185136--9f444f2f20a80c88766cbf6170b22f1d.nii.gz

LMU_1/sub-0025355/ses-1/mri/m0wp1sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/39/MD5E-s2585682--5ce06c2f90af959b81864c378fea2fae.nii.gz/MD5E-s2585682--5ce06c2f90af959b81864c378fea2fae.nii.gz

LMU_1/sub-0025355/ses-1/mri/m0wp2sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/88/Z8/MD5E-s2304790--cf1ba289b86c38b987b0e3ef60b1b71e.nii.gz/MD5E-s2304790--cf1ba289b86c38b987b0e3ef60b1b71e.nii.gz

LMU_1/sub-0025355/ses-1/mri/m0wp3sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2m/W4/MD5E-s2513998--19d62e2b26130b6083a5b1dfcc4e97b0.nii.gz/MD5E-s2513998--19d62e2b26130b6083a5b1dfcc4e97b0.nii.gz

LMU_1/sub-0025355/ses-1/mri/mori_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025355/ses-1/mri/mori_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/fW/MD5E-s217681--740109471036b34faf06c0c248cf77cf.nii.gz/MD5E-s217681--740109471036b34faf06c0c248cf77cf.nii.gz

LMU_1/sub-0025355/ses-1/mri/mwp1sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/Qm/MD5E-s2588714--5ca3c77d40341f9dbe2bc9f8d0465b8e.nii.gz/MD5E-s2588714--5ca3c77d40341f9dbe2bc9f8d0465b8e.nii.gz

LMU_1/sub-0025355/ses-1/mri/mwp2sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/q5/MD5E-s2304852--54be8d01e66723adfe2226681699695a.nii.gz/MD5E-s2304852--54be8d01e66723adfe2226681699695a.nii.gz

LMU_1/sub-0025355/ses-1/mri/mwp3sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/g3/MD5E-s2513603--f5d74484928711b1344aa495a7b1fd8b.nii.gz/MD5E-s2513603--f5d74484928711b1344aa495a7b1fd8b.nii.gz

LMU_1/sub-0025355/ses-1/mri/neuromorphometrics_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_1/sub-0025355/ses-1/mri/neuromorphometrics_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/gQ/MD5E-s248359--7a6eeba1fbb4285ec9f2f4e70873e72a.nii.gz/MD5E-s248359--7a6eeba1fbb4285ec9f2f4e70873e72a.nii.gz

LMU_1/sub-0025355/ses-1/mri/p0sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/pm/MD5E-s787964--f713ecbd783bb26c7244f271deec5669.nii.gz/MD5E-s787964--f713ecbd783bb26c7244f271deec5669.nii.gz

LMU_1/sub-0025355/ses-1/mri/p1sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FJ/8j/MD5E-s844151--7d3e2f43dd2385755feba90f858d5abb.nii.gz/MD5E-s844151--7d3e2f43dd2385755feba90f858d5abb.nii.gz

LMU_1/sub-0025355/ses-1/mri/p2sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025355/ses-1/mri/p3sub-0025355_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025355/ses-1/mri/rp1sub-0025355_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025355/ses-1/mri/rp2sub-0025355_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025355/ses-1/mri/rp3sub-0025355_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025355/ses-1/mri/t_sub-0025355_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025355/ses-1/mri/t_sub-0025355_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1F/Jg/MD5E-s284--e9d550258cbd0dafbb996b9e0b2accbc.mat/MD5E-s284--e9d550258cbd0dafbb996b9e0b2accbc.mat

LMU_1/sub-0025355/ses-1/mri/thalamus_sub-0025355_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025355/ses-1/mri/thalamus_sub-0025355_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/m8/MD5E-s20384--912c43fe00c6997ae300e2e4a644269f.nii.gz/MD5E-s20384--912c43fe00c6997ae300e2e4a644269f.nii.gz

LMU_1/sub-0025355/ses-1/mri/wj_sub-0025355_ses-1_run-1_T1w.nii.gz

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