[DATALAD RUNCMD] Compute SWU_4/sub-0025823/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025823/ses-2/anat/sub-0025823_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025823/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025823/ses-2/label/catROI_sub-0025823_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/32/MD5E-s61245--095794fc8402bac4bc9cd03e568ba569.mat/MD5E-s61245--095794fc8402bac4bc9cd03e568ba569.mat

SWU_4/sub-0025823/ses-2/label/catROI_sub-0025823_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/88/MD5E-s188970--6c0b2ab1681b37fc7eaebd71b2e93a64.xml/MD5E-s188970--6c0b2ab1681b37fc7eaebd71b2e93a64.xml

SWU_4/sub-0025823/ses-2/label/catROIs_sub-0025823_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/mp/MD5E-s120203--094ecb60820dd87f30a36a9086091be7.mat/MD5E-s120203--094ecb60820dd87f30a36a9086091be7.mat

SWU_4/sub-0025823/ses-2/label/catROIs_sub-0025823_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/zK/MD5E-s332142--1f81bb578e18d3b562cd4d1836ca3158.xml/MD5E-s332142--1f81bb578e18d3b562cd4d1836ca3158.xml

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/J0/MD5E-s162307--a167c92b947f86335fc36b4b01df9040.nii.gz/MD5E-s162307--a167c92b947f86335fc36b4b01df9040.nii.gz

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KZ/J0/MD5E-s180951--3c3e8b1599908f63d88b771fdfcbbb72.nii.gz/MD5E-s180951--3c3e8b1599908f63d88b771fdfcbbb72.nii.gz

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kG/pw/MD5E-s244204--832b329e1a279475339b1a47a15cfa8e.nii.gz/MD5E-s244204--832b329e1a279475339b1a47a15cfa8e.nii.gz

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025823/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7m/9v/MD5E-s271208--20699d7d076c8ca004ea1c8b7b825812.nii.gz/MD5E-s271208--20699d7d076c8ca004ea1c8b7b825812.nii.gz

SWU_4/sub-0025823/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025823/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/gk/MD5E-s24355--5383549e2891b2229c5f9a268e41bd4b.nii.gz/MD5E-s24355--5383549e2891b2229c5f9a268e41bd4b.nii.gz

SWU_4/sub-0025823/ses-2/mri/aal3_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025823/ses-2/mri/aal3_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/K8/MD5E-s182373--dac32137fc276f4c3b232b41b3ae8ca8.nii.gz/MD5E-s182373--dac32137fc276f4c3b232b41b3ae8ca8.nii.gz

SWU_4/sub-0025823/ses-2/mri/anatomy3_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025823/ses-2/mri/anatomy3_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/xg/MD5E-s132828--5a4de1eb2983fd96bb23628a93493bd0.nii.gz/MD5E-s132828--5a4de1eb2983fd96bb23628a93493bd0.nii.gz

SWU_4/sub-0025823/ses-2/mri/anon_misub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vq/vM/MD5E-s9475908--254c171776ea6da7241eeeab8a856281.nii.gz/MD5E-s9475908--254c171776ea6da7241eeeab8a856281.nii.gz

SWU_4/sub-0025823/ses-2/mri/anon_msub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/24/19/MD5E-s11270084--abc79c6da74c9d34d8d5202d8df8e18e.nii.gz/MD5E-s11270084--abc79c6da74c9d34d8d5202d8df8e18e.nii.gz

SWU_4/sub-0025823/ses-2/mri/cat_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/gp/MD5E-s96965--db26678161f5538bbf0b842f0aa00500.nii.gz/MD5E-s96965--db26678161f5538bbf0b842f0aa00500.nii.gz

SWU_4/sub-0025823/ses-2/mri/cobra_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025823/ses-2/mri/cobra_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/zM/MD5E-s47413--ebe693b365c20fda772452a4d69a99fa.nii.gz/MD5E-s47413--ebe693b365c20fda772452a4d69a99fa.nii.gz

SWU_4/sub-0025823/ses-2/mri/hammers_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025823/ses-2/mri/hammers_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mv/F1/MD5E-s144999--9486f4b705f1e45aa43dd8d66ad18068.nii.gz/MD5E-s144999--9486f4b705f1e45aa43dd8d66ad18068.nii.gz

SWU_4/sub-0025823/ses-2/mri/ibsr_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025823/ses-2/mri/ibsr_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w5/Zv/MD5E-s152744--7d58739b834e6d2ed2398f3feef30cdb.nii.gz/MD5E-s152744--7d58739b834e6d2ed2398f3feef30cdb.nii.gz

SWU_4/sub-0025823/ses-2/mri/it_sub-0025823_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/ff/MD5E-s283--d4db5c9b86a0b0106c2fdeedd3ee6333.mat/MD5E-s283--d4db5c9b86a0b0106c2fdeedd3ee6333.mat

SWU_4/sub-0025823/ses-2/mri/it_sub-0025823_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/z2/MD5E-s282--31cf284d5f864bf66a570a24e594e633.mat/MD5E-s282--31cf284d5f864bf66a570a24e594e633.mat

SWU_4/sub-0025823/ses-2/mri/iy_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QQ/7k/MD5E-s44242708--79ef623f9c16e2186d48707702562da1.nii.gz/MD5E-s44242708--79ef623f9c16e2186d48707702562da1.nii.gz

SWU_4/sub-0025823/ses-2/mri/julichbrain_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025823/ses-2/mri/julichbrain_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/1K/MD5E-s193791--882034a78da618679c59298587bf5f20.nii.gz/MD5E-s193791--882034a78da618679c59298587bf5f20.nii.gz

SWU_4/sub-0025823/ses-2/mri/lpba40_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025823/ses-2/mri/lpba40_sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/m0wp1sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/gV/MD5E-s2574776--be1f6121dbcb19d1c22a6b17ad941f8e.nii.gz/MD5E-s2574776--be1f6121dbcb19d1c22a6b17ad941f8e.nii.gz

SWU_4/sub-0025823/ses-2/mri/m0wp2sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WG/zP/MD5E-s2288885--cbea21591fcd4b1c881be36ee796f770.nii.gz/MD5E-s2288885--cbea21591fcd4b1c881be36ee796f770.nii.gz

SWU_4/sub-0025823/ses-2/mri/m0wp3sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/vX/MD5E-s2524191--cbacbdc9cbc016bda6b779f0bdbb2c6f.nii.gz/MD5E-s2524191--cbacbdc9cbc016bda6b779f0bdbb2c6f.nii.gz

SWU_4/sub-0025823/ses-2/mri/mori_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025823/ses-2/mri/mori_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wp/2j/MD5E-s169520--02d12574bf3222ba028e2e1ec1107f09.nii.gz/MD5E-s169520--02d12574bf3222ba028e2e1ec1107f09.nii.gz

SWU_4/sub-0025823/ses-2/mri/mwp1sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/mwp2sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gM/96/MD5E-s2285694--bd654c720bc44f5baa943a661ea5d619.nii.gz/MD5E-s2285694--bd654c720bc44f5baa943a661ea5d619.nii.gz

SWU_4/sub-0025823/ses-2/mri/mwp3sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/neuromorphometrics_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025823/ses-2/mri/neuromorphometrics_sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/p0sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3q/8f/MD5E-s608678--eb95a15326d3a74b2ef0a33cece721c1.nii.gz/MD5E-s608678--eb95a15326d3a74b2ef0a33cece721c1.nii.gz

SWU_4/sub-0025823/ses-2/mri/p1sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/p2sub-0025823_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/jp/9V/MD5E-s424087--df28b333722999d868e73695f62179d7.nii.gz/MD5E-s424087--df28b333722999d868e73695f62179d7.nii.gz

SWU_4/sub-0025823/ses-2/mri/p3sub-0025823_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025823/ses-2/mri/rp1sub-0025823_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025823/ses-2/mri/rp2sub-0025823_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025823/ses-2/mri/rp3sub-0025823_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025823/ses-2/mri/t_sub-0025823_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025823/ses-2/mri/t_sub-0025823_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025823/ses-2/mri/thalamus_sub-0025823_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025823/ses-2/mri/thalamus_sub-0025823_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025823/ses-2/mri/wj_sub-0025823_ses-2_run-1_T1w.nii.gz

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