[DATALAD RUNCMD] Compute IPCAS_7/sub-0026059/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026059/ses-1/anat/sub-0026059_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026059/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026059/ses-1/label/catROI_sub-0026059_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/4v/MD5E-s61330--7a4ca18c23df67edc28967042fbbf198.mat/MD5E-s61330--7a4ca18c23df67edc28967042fbbf198.mat

IPCAS_7/sub-0026059/ses-1/label/catROI_sub-0026059_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/Wj/MD5E-s188943--e8f324f7f0cfd77e40950322104510dc.xml/MD5E-s188943--e8f324f7f0cfd77e40950322104510dc.xml

IPCAS_7/sub-0026059/ses-1/label/catROIs_sub-0026059_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/KX/MD5E-s120060--0e6f119a15ce525bba222cf6896f66f2.mat/MD5E-s120060--0e6f119a15ce525bba222cf6896f66f2.mat

IPCAS_7/sub-0026059/ses-1/label/catROIs_sub-0026059_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/98/4m/MD5E-s332129--09618c0a8d90fe63d2d3d07c431c40ed.xml/MD5E-s332129--09618c0a8d90fe63d2d3d07c431c40ed.xml

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2j/kF/MD5E-s162463--016512a3096bceee04ca932f598a0367.nii.gz/MD5E-s162463--016512a3096bceee04ca932f598a0367.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kz/xz/MD5E-s181075--0d08c406b911522770d670cee1a69fb6.nii.gz/MD5E-s181075--0d08c406b911522770d670cee1a69fb6.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/jw/MD5E-s246391--93e8afef4c8ac0da321a259be4b5c1ff.nii.gz/MD5E-s246391--93e8afef4c8ac0da321a259be4b5c1ff.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026059/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/98/MD5E-s273215--86cd9e1931a738b4564eb1c1600d5bea.nii.gz/MD5E-s273215--86cd9e1931a738b4564eb1c1600d5bea.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IPCAS_7/sub-0026059/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wj/13/MD5E-s24846--0169c616bdd26c2071c4dd69188d95c1.nii.gz/MD5E-s24846--0169c616bdd26c2071c4dd69188d95c1.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/aal3_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026059/ses-1/mri/aal3_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/Fk/MD5E-s182158--cd574dc808cd071db8e4c78e843c566c.nii.gz/MD5E-s182158--cd574dc808cd071db8e4c78e843c566c.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/anatomy3_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026059/ses-1/mri/anatomy3_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/JF/MD5E-s132465--1f5e4723a351317feaec06e1713faaf4.nii.gz/MD5E-s132465--1f5e4723a351317feaec06e1713faaf4.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/anon_misub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/5m/MD5E-s4472357--dff926ff3fc88fe3539814666669d72b.nii.gz/MD5E-s4472357--dff926ff3fc88fe3539814666669d72b.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/anon_msub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/Kk/MD5E-s10746996--c203da42f0ceb7f877ccbed8a0e3af05.nii.gz/MD5E-s10746996--c203da42f0ceb7f877ccbed8a0e3af05.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/cat_sub-0026059_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/m0/zZ/MD5E-s93652--05ac3485099e399f0e2cd48b67175208.nii.gz/MD5E-s93652--05ac3485099e399f0e2cd48b67175208.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/cobra_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026059/ses-1/mri/cobra_sub-0026059_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/ZK/22/MD5E-s45807--c2e2f999d17f4621d1da1fe3a30783f9.nii.gz/MD5E-s45807--c2e2f999d17f4621d1da1fe3a30783f9.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/hammers_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026059/ses-1/mri/hammers_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/mG/MD5E-s142053--5afeb62bbb6c8ff6bafab772d6481f76.nii.gz/MD5E-s142053--5afeb62bbb6c8ff6bafab772d6481f76.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/ibsr_sub-0026059_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026059/ses-1/mri/ibsr_sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/mF/MD5E-s150995--46ae8f1a9d13d9aad067ca71004d73da.nii.gz/MD5E-s150995--46ae8f1a9d13d9aad067ca71004d73da.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/it_sub-0026059_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fQ/x1/MD5E-s282--062573a2950efd14038269a348f86c51.mat/MD5E-s282--062573a2950efd14038269a348f86c51.mat

IPCAS_7/sub-0026059/ses-1/mri/it_sub-0026059_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/3F/MD5E-s283--9ffebc83bff9eb1336b0aec3e54073a8.mat/MD5E-s283--9ffebc83bff9eb1336b0aec3e54073a8.mat

IPCAS_7/sub-0026059/ses-1/mri/iy_sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/julichbrain_sub-0026059_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026059/ses-1/mri/julichbrain_sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/lpba40_sub-0026059_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

IPCAS_7/sub-0026059/ses-1/mri/lpba40_sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/m0wp1sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/m0wp2sub-0026059_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gx/21/MD5E-s2292689--40076fbf834ad9e26bcedb9ef503e2f8.nii.gz/MD5E-s2292689--40076fbf834ad9e26bcedb9ef503e2f8.nii.gz

IPCAS_7/sub-0026059/ses-1/mri/m0wp3sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/mori_sub-0026059_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026059/ses-1/mri/mori_sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/mwp1sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/mwp2sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/mwp3sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/neuromorphometrics_sub-0026059_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026059/ses-1/mri/neuromorphometrics_sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/p0sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/p1sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/p2sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/p3sub-0026059_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/rp1sub-0026059_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/rp2sub-0026059_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/rp3sub-0026059_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026059/ses-1/mri/t_sub-0026059_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026059/ses-1/mri/t_sub-0026059_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026059/ses-1/mri/thalamus_sub-0026059_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026059/ses-1/mri/thalamus_sub-0026059_ses-1_run-1_T1w.nii.gz

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