[DATALAD RUNCMD] Compute NYU_2/sub-0025112/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025112/ses-1/anat/sub-0025112_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025112/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025112/ses-1/label/catROI_sub-0025112_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vv/76/MD5E-s57826--e8ea6f284926b99bd05370012663be27.mat/MD5E-s57826--e8ea6f284926b99bd05370012663be27.mat

NYU_2/sub-0025112/ses-1/label/catROI_sub-0025112_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qg/72/MD5E-s189115--aedcfb3ddbc9f42796931d30c382cafd.xml/MD5E-s189115--aedcfb3ddbc9f42796931d30c382cafd.xml

NYU_2/sub-0025112/ses-1/label/catROI_sub-0025112_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1k/p6/MD5E-s57724--2cb5ffef7cdb62a8fb3405a710e47f92.mat/MD5E-s57724--2cb5ffef7cdb62a8fb3405a710e47f92.mat

NYU_2/sub-0025112/ses-1/label/catROI_sub-0025112_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8m/GK/MD5E-s189065--ff40fc8a6b31c894c5e09aef85f5d969.xml/MD5E-s189065--ff40fc8a6b31c894c5e09aef85f5d969.xml

NYU_2/sub-0025112/ses-1/label/catROIs_sub-0025112_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/75/MD5E-s120295--3acfa422fd8ba43a5493a5cfab8686b6.mat/MD5E-s120295--3acfa422fd8ba43a5493a5cfab8686b6.mat

NYU_2/sub-0025112/ses-1/label/catROIs_sub-0025112_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pq/M7/MD5E-s332079--3fedf22f93738dd51fac4063120dc11e.xml/MD5E-s332079--3fedf22f93738dd51fac4063120dc11e.xml

NYU_2/sub-0025112/ses-1/label/catROIs_sub-0025112_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/j8/26/MD5E-s120259--d422c1a1c1309fbdcc0f1444809fc453.mat/MD5E-s120259--d422c1a1c1309fbdcc0f1444809fc453.mat

NYU_2/sub-0025112/ses-1/label/catROIs_sub-0025112_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zw/98/MD5E-s332186--f77aa0c945d09e29f61dd0169a88a4db.xml/MD5E-s332186--f77aa0c945d09e29f61dd0169a88a4db.xml

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/f7/MD5E-s133481--b10790e504739b5a368cbe68609589ff.nii.gz/MD5E-s133481--b10790e504739b5a368cbe68609589ff.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/27/82/MD5E-s133769--3aac8440ba4837dcd7b0fe4d833b6b91.nii.gz/MD5E-s133769--3aac8440ba4837dcd7b0fe4d833b6b91.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/GV/MD5E-s151043--8b97f92691d9c97fdfed6a3a4c7b5be8.nii.gz/MD5E-s151043--8b97f92691d9c97fdfed6a3a4c7b5be8.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Z8/25/MD5E-s150620--c7935bb86248ea6f4d8645b398d7602d.nii.gz/MD5E-s150620--c7935bb86248ea6f4d8645b398d7602d.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/76/gZ/MD5E-s202037--2bf5bccc2c566b26c1a0fe12a7c703bc.nii.gz/MD5E-s202037--2bf5bccc2c566b26c1a0fe12a7c703bc.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PF/Pf/MD5E-s201995--5bf2994e2cf5d462f639a6794905acee.nii.gz/MD5E-s201995--5bf2994e2cf5d462f639a6794905acee.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/KF/MD5E-s225324--c24e8e50089fbe435ed625265d87e8eb.nii.gz/MD5E-s225324--c24e8e50089fbe435ed625265d87e8eb.nii.gz

NYU_2/sub-0025112/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zZ/WQ/MD5E-s224718--8933c9024452caee10b5081849716751.nii.gz/MD5E-s224718--8933c9024452caee10b5081849716751.nii.gz

NYU_2/sub-0025112/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/zM/MD5E-s18260--fd0e5e43ac5600adae7034cbc314a7fd.nii.gz/MD5E-s18260--fd0e5e43ac5600adae7034cbc314a7fd.nii.gz

NYU_2/sub-0025112/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mq/Kq/MD5E-s18226--47ac3b3356160198f7dd3fdb879adde0.nii.gz/MD5E-s18226--47ac3b3356160198f7dd3fdb879adde0.nii.gz

NYU_2/sub-0025112/ses-1/mri/aal3_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mw/9g/MD5E-s154682--06e937e83c7fd8fa5cd66730f598129a.nii.gz/MD5E-s154682--06e937e83c7fd8fa5cd66730f598129a.nii.gz

NYU_2/sub-0025112/ses-1/mri/aal3_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qJ/10/MD5E-s154680--6a6eba48d6aa79a82fad2b0dc25373c7.nii.gz/MD5E-s154680--6a6eba48d6aa79a82fad2b0dc25373c7.nii.gz

NYU_2/sub-0025112/ses-1/mri/anatomy3_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/8w/MD5E-s106317--4aac26484ae34f2d056e9810c4bc0338.nii.gz/MD5E-s106317--4aac26484ae34f2d056e9810c4bc0338.nii.gz

NYU_2/sub-0025112/ses-1/mri/anatomy3_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7m/4p/MD5E-s106122--e47eeb019bd004997bb521042b8fa4ef.nii.gz/MD5E-s106122--e47eeb019bd004997bb521042b8fa4ef.nii.gz

NYU_2/sub-0025112/ses-1/mri/anon_misub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/pW/MD5E-s3492078--068c9da06dd97db968cfedc887dc77e5.nii.gz/MD5E-s3492078--068c9da06dd97db968cfedc887dc77e5.nii.gz

NYU_2/sub-0025112/ses-1/mri/anon_misub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M1/Xf/MD5E-s3524763--5b01d0fe424dda882aefae7eca750384.nii.gz/MD5E-s3524763--5b01d0fe424dda882aefae7eca750384.nii.gz

NYU_2/sub-0025112/ses-1/mri/anon_msub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/QJ/MD5E-s6697849--0a48a52e04a014de3c1a441c8b764193.nii.gz/MD5E-s6697849--0a48a52e04a014de3c1a441c8b764193.nii.gz

NYU_2/sub-0025112/ses-1/mri/anon_msub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/19/24/MD5E-s6655589--6e2cc864b8d292adf08207f6f8f9e920.nii.gz/MD5E-s6655589--6e2cc864b8d292adf08207f6f8f9e920.nii.gz

NYU_2/sub-0025112/ses-1/mri/cat_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/jw/MD5E-s79569--8a18e306fdbea1b6aa0dbe119c9b1a91.nii.gz/MD5E-s79569--8a18e306fdbea1b6aa0dbe119c9b1a91.nii.gz

NYU_2/sub-0025112/ses-1/mri/cat_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q6/QJ/MD5E-s79101--e1402eb826b9b823449b898480920f4a.nii.gz/MD5E-s79101--e1402eb826b9b823449b898480920f4a.nii.gz

NYU_2/sub-0025112/ses-1/mri/cobra_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/Jp/MD5E-s38300--504cbeb2f531bd50373e18e845218f56.nii.gz/MD5E-s38300--504cbeb2f531bd50373e18e845218f56.nii.gz

NYU_2/sub-0025112/ses-1/mri/cobra_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/22/kK/MD5E-s38104--4a717c8f4bb3e0214e08d2df5ac65231.nii.gz/MD5E-s38104--4a717c8f4bb3e0214e08d2df5ac65231.nii.gz

NYU_2/sub-0025112/ses-1/mri/hammers_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/8J/MD5E-s117122--1c7059bc197cf341e263e028ce19a0da.nii.gz/MD5E-s117122--1c7059bc197cf341e263e028ce19a0da.nii.gz

NYU_2/sub-0025112/ses-1/mri/hammers_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025112/ses-1/mri/ibsr_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025112/ses-1/mri/ibsr_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025112/ses-1/mri/it_sub-0025112_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QV/JX/MD5E-s283--cd3caad1a284c22cf4a22e2e04552423.mat/MD5E-s283--cd3caad1a284c22cf4a22e2e04552423.mat

NYU_2/sub-0025112/ses-1/mri/it_sub-0025112_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z6/Wj/MD5E-s283--7123c718a8d807730e04fe148b2922d8.mat/MD5E-s283--7123c718a8d807730e04fe148b2922d8.mat

NYU_2/sub-0025112/ses-1/mri/it_sub-0025112_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5G/vZ/MD5E-s283--bf4dfcd3711c57dd93298c8484241b38.mat/MD5E-s283--bf4dfcd3711c57dd93298c8484241b38.mat

NYU_2/sub-0025112/ses-1/mri/it_sub-0025112_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025112/ses-1/mri/iy_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025112/ses-1/mri/iy_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025112/ses-1/mri/julichbrain_sub-0025112_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025112/ses-1/mri/julichbrain_sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/lpba40_sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/lpba40_sub-0025112_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025112/ses-1/mri/m0wp1sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/m0wp1sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/m0wp2sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/m0wp2sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/m0wp3sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/m0wp3sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/mori_sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/mori_sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/mwp1sub-0025112_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/mwp1sub-0025112_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025112/ses-1/mri/mwp2sub-0025112_ses-1_run-1_T1w.nii.gz

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