[DATALAD RUNCMD] Compute XHCUMS/sub-0025995/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0025995/ses-3/anat/sub-0025995_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0025995/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0025995/ses-3/label/catROI_sub-0025995_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8k/Xg/MD5E-s61304--a1c35b7338ce3fe27a08ddcee1b4c07b.mat/MD5E-s61304--a1c35b7338ce3fe27a08ddcee1b4c07b.mat

XHCUMS/sub-0025995/ses-3/label/catROI_sub-0025995_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/56/MD5E-s189334--9875213317342f014d791a9f56547a17.xml/MD5E-s189334--9875213317342f014d791a9f56547a17.xml

XHCUMS/sub-0025995/ses-3/label/catROIs_sub-0025995_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/P6/MD5E-s120153--0d8d77a6ce1784572c0cc068b488d293.mat/MD5E-s120153--0d8d77a6ce1784572c0cc068b488d293.mat

XHCUMS/sub-0025995/ses-3/label/catROIs_sub-0025995_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/WG/MD5E-s332126--159a9dd9213fedfd8fc7c330a459bb01.xml/MD5E-s332126--159a9dd9213fedfd8fc7c330a459bb01.xml

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m3/W2/MD5E-s151010--c103f05064c65d356ffc69bd1f55efe4.nii.gz/MD5E-s151010--c103f05064c65d356ffc69bd1f55efe4.nii.gz

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/pM/MD5E-s169338--7da90d69fde7582961c2525942330235.nii.gz/MD5E-s169338--7da90d69fde7582961c2525942330235.nii.gz

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/73/FK/MD5E-s229448--9caceee99a64dde7b1a87d73fef8584a.nii.gz/MD5E-s229448--9caceee99a64dde7b1a87d73fef8584a.nii.gz

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0025995/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/PM/MD5E-s254914--fe0d64d24687dd977c862f5513e0165b.nii.gz/MD5E-s254914--fe0d64d24687dd977c862f5513e0165b.nii.gz

XHCUMS/sub-0025995/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

XHCUMS/sub-0025995/ses-3/mri/Tian_Subcortex_S2_7T_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/fm/MD5E-s24200--156a476f73477c22be5e983f6e15fc03.nii.gz/MD5E-s24200--156a476f73477c22be5e983f6e15fc03.nii.gz

XHCUMS/sub-0025995/ses-3/mri/aal3_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

XHCUMS/sub-0025995/ses-3/mri/aal3_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/Kw/MD5E-s171538--dd41b887eb8157d37addbf6ee88cfb12.nii.gz/MD5E-s171538--dd41b887eb8157d37addbf6ee88cfb12.nii.gz

XHCUMS/sub-0025995/ses-3/mri/anatomy3_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

XHCUMS/sub-0025995/ses-3/mri/anatomy3_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MX/62/MD5E-s122237--7f9340df3aa8a59b10480bbb7d9b2424.nii.gz/MD5E-s122237--7f9340df3aa8a59b10480bbb7d9b2424.nii.gz

XHCUMS/sub-0025995/ses-3/mri/anon_misub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Q/73/MD5E-s8827718--3a993eee91310c2288c25023739b8f8b.nii.gz/MD5E-s8827718--3a993eee91310c2288c25023739b8f8b.nii.gz

XHCUMS/sub-0025995/ses-3/mri/anon_msub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/44/MD5E-s9827830--cd864da72ed46bf2257fc5f44e819fb9.nii.gz/MD5E-s9827830--cd864da72ed46bf2257fc5f44e819fb9.nii.gz

XHCUMS/sub-0025995/ses-3/mri/cat_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0025995/ses-3/mri/cobra_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

XHCUMS/sub-0025995/ses-3/mri/cobra_sub-0025995_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Fg/k4/MD5E-s44575--55711858d4959b564cc7757429e800c3.nii.gz/MD5E-s44575--55711858d4959b564cc7757429e800c3.nii.gz

XHCUMS/sub-0025995/ses-3/mri/hammers_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

XHCUMS/sub-0025995/ses-3/mri/hammers_sub-0025995_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/5J/Wv/MD5E-s133276--a259386088fcec518724ebcf28d5b442.nii.gz/MD5E-s133276--a259386088fcec518724ebcf28d5b442.nii.gz

XHCUMS/sub-0025995/ses-3/mri/ibsr_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

XHCUMS/sub-0025995/ses-3/mri/ibsr_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vF/fj/MD5E-s143160--3a08f881ccb02ad7a04dac88e2726b7c.nii.gz/MD5E-s143160--3a08f881ccb02ad7a04dac88e2726b7c.nii.gz

XHCUMS/sub-0025995/ses-3/mri/it_sub-0025995_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/GK/MD5E-s284--66ba695d1541c762d0f9ade8aa872850.mat/MD5E-s284--66ba695d1541c762d0f9ade8aa872850.mat

XHCUMS/sub-0025995/ses-3/mri/it_sub-0025995_ses-3_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/0J/MD5E-s283--d84bf682b555638b6b80aae78877ca29.mat/MD5E-s283--d84bf682b555638b6b80aae78877ca29.mat

XHCUMS/sub-0025995/ses-3/mri/iy_sub-0025995_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qk/1v/MD5E-s41799920--4eb29f5bb80f6d77f8f7f479780a0823.nii.gz/MD5E-s41799920--4eb29f5bb80f6d77f8f7f479780a0823.nii.gz

XHCUMS/sub-0025995/ses-3/mri/julichbrain_sub-0025995_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

XHCUMS/sub-0025995/ses-3/mri/julichbrain_sub-0025995_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M9/wm/MD5E-s179809--1ae55308c641b3b2d37deb4591bb429a.nii.gz/MD5E-s179809--1ae55308c641b3b2d37deb4591bb429a.nii.gz

XHCUMS/sub-0025995/ses-3/mri/lpba40_sub-0025995_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025995/ses-3/mri/lpba40_sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/m0wp1sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/m0wp2sub-0025995_ses-3_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M2/3v/MD5E-s2331477--99ab3f2e8a1249b9fa04fe4e643dee24.nii.gz/MD5E-s2331477--99ab3f2e8a1249b9fa04fe4e643dee24.nii.gz

XHCUMS/sub-0025995/ses-3/mri/m0wp3sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/mori_sub-0025995_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025995/ses-3/mri/mori_sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/mwp1sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/mwp2sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/mwp3sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/neuromorphometrics_sub-0025995_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025995/ses-3/mri/neuromorphometrics_sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/p0sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/p1sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/p2sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/p3sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/rp1sub-0025995_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/rp2sub-0025995_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/rp3sub-0025995_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/t_sub-0025995_ses-3_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0025995/ses-3/mri/t_sub-0025995_ses-3_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0025995/ses-3/mri/thalamus_sub-0025995_ses-3_run-1_T1w.csv

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XHCUMS/sub-0025995/ses-3/mri/thalamus_sub-0025995_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0025995/ses-3/mri/wj_sub-0025995_ses-3_run-1_T1w.nii.gz

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