[DATALAD RUNCMD] Compute SWU_4/sub-0025700/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025700/ses-2/anat/sub-0025700_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025700/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025700/ses-2/label/catROI_sub-0025700_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/x1/MD5E-s57890--669145ae615e2e7d85d2e83f9b65ea4f.mat/MD5E-s57890--669145ae615e2e7d85d2e83f9b65ea4f.mat

SWU_4/sub-0025700/ses-2/label/catROI_sub-0025700_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x0/Qj/MD5E-s188589--fb35f36f3de0c3008b0585f0a525695a.xml/MD5E-s188589--fb35f36f3de0c3008b0585f0a525695a.xml

SWU_4/sub-0025700/ses-2/label/catROIs_sub-0025700_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q1/g8/MD5E-s120046--a6412f92a3e026abd7754624657f6951.mat/MD5E-s120046--a6412f92a3e026abd7754624657f6951.mat

SWU_4/sub-0025700/ses-2/label/catROIs_sub-0025700_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K1/fK/MD5E-s332131--2ded4107b4ae71983568c5eb4872d399.xml/MD5E-s332131--2ded4107b4ae71983568c5eb4872d399.xml

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/MK/MD5E-s172129--330d171e63cecec7cf19e68f3de5f9eb.nii.gz/MD5E-s172129--330d171e63cecec7cf19e68f3de5f9eb.nii.gz

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/mK/MD5E-s192138--5816859959fb69b15012e630801ee4fe.nii.gz/MD5E-s192138--5816859959fb69b15012e630801ee4fe.nii.gz

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/2z/MD5E-s259786--bd2f8fa3d00ef2fa279d5db4b8656e8c.nii.gz/MD5E-s259786--bd2f8fa3d00ef2fa279d5db4b8656e8c.nii.gz

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025700/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pV/x9/MD5E-s287532--789130840dfc0cf6be9765721e37c374.nii.gz/MD5E-s287532--789130840dfc0cf6be9765721e37c374.nii.gz

SWU_4/sub-0025700/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025700/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/G1/MD5E-s26287--51f3f07896cf52251dc22ec1469da28b.nii.gz/MD5E-s26287--51f3f07896cf52251dc22ec1469da28b.nii.gz

SWU_4/sub-0025700/ses-2/mri/aal3_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025700/ses-2/mri/aal3_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/xM/MD5E-s194519--91a9a33e0454555ffca804fdf0143ac0.nii.gz/MD5E-s194519--91a9a33e0454555ffca804fdf0143ac0.nii.gz

SWU_4/sub-0025700/ses-2/mri/anatomy3_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025700/ses-2/mri/anatomy3_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V8/78/MD5E-s139920--8b775cb907becde5e397582e9f6501a5.nii.gz/MD5E-s139920--8b775cb907becde5e397582e9f6501a5.nii.gz

SWU_4/sub-0025700/ses-2/mri/anon_misub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zq/0p/MD5E-s9142933--28713fbd82cbc319ae453959e0fe612c.nii.gz/MD5E-s9142933--28713fbd82cbc319ae453959e0fe612c.nii.gz

SWU_4/sub-0025700/ses-2/mri/anon_msub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JQ/09/MD5E-s9052518--912a59a43d298d4d632a4b9fe2d8eca1.nii.gz/MD5E-s9052518--912a59a43d298d4d632a4b9fe2d8eca1.nii.gz

SWU_4/sub-0025700/ses-2/mri/cat_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kP/8X/MD5E-s102818--46453cf3501187e7b39b340ecea1f15f.nii.gz/MD5E-s102818--46453cf3501187e7b39b340ecea1f15f.nii.gz

SWU_4/sub-0025700/ses-2/mri/cobra_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025700/ses-2/mri/cobra_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/8g/MD5E-s49320--091a20212fb5dcd68a2be5536939a70a.nii.gz/MD5E-s49320--091a20212fb5dcd68a2be5536939a70a.nii.gz

SWU_4/sub-0025700/ses-2/mri/hammers_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025700/ses-2/mri/hammers_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zm/Jw/MD5E-s152321--a9d3c3a88fa5c2cbb3b1159216f42bb5.nii.gz/MD5E-s152321--a9d3c3a88fa5c2cbb3b1159216f42bb5.nii.gz

SWU_4/sub-0025700/ses-2/mri/ibsr_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025700/ses-2/mri/ibsr_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/1F/MD5E-s161862--29cdd168c5e7f120defefcbac3ca4c42.nii.gz/MD5E-s161862--29cdd168c5e7f120defefcbac3ca4c42.nii.gz

SWU_4/sub-0025700/ses-2/mri/it_sub-0025700_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/36/MD5E-s282--4e2eb8769ec9271d76ea349b6b38e2cc.mat/MD5E-s282--4e2eb8769ec9271d76ea349b6b38e2cc.mat

SWU_4/sub-0025700/ses-2/mri/it_sub-0025700_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/Wg/MD5E-s283--a5c24f126897e489ab3cd4f2671840be.mat/MD5E-s283--a5c24f126897e489ab3cd4f2671840be.mat

SWU_4/sub-0025700/ses-2/mri/iy_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/7M/MD5E-s48651063--c3cb097268fc1e6606455482f12a9aa8.nii.gz/MD5E-s48651063--c3cb097268fc1e6606455482f12a9aa8.nii.gz

SWU_4/sub-0025700/ses-2/mri/julichbrain_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025700/ses-2/mri/julichbrain_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/3f/MD5E-s206390--cda0213ba239b22f9ed04bf0ae68a1d9.nii.gz/MD5E-s206390--cda0213ba239b22f9ed04bf0ae68a1d9.nii.gz

SWU_4/sub-0025700/ses-2/mri/lpba40_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025700/ses-2/mri/lpba40_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vJ/JG/MD5E-s148404--33d85bf32422cdcb3c9b3962fc6e4f74.nii.gz/MD5E-s148404--33d85bf32422cdcb3c9b3962fc6e4f74.nii.gz

SWU_4/sub-0025700/ses-2/mri/m0wp1sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/5J/MD5E-s2585238--28163b7bb8f8aeb924a094ceabff9bb9.nii.gz/MD5E-s2585238--28163b7bb8f8aeb924a094ceabff9bb9.nii.gz

SWU_4/sub-0025700/ses-2/mri/m0wp2sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W7/qg/MD5E-s2330084--bec60849a68e7e33a1e64a9b197b295b.nii.gz/MD5E-s2330084--bec60849a68e7e33a1e64a9b197b295b.nii.gz

SWU_4/sub-0025700/ses-2/mri/m0wp3sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zz/Xp/MD5E-s2489098--709ff2a50cc413fe1bfeeb9b2a827536.nii.gz/MD5E-s2489098--709ff2a50cc413fe1bfeeb9b2a827536.nii.gz

SWU_4/sub-0025700/ses-2/mri/mori_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025700/ses-2/mri/mori_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4m/G6/MD5E-s179804--3fe1ca6c7fffb4fef91380772e4a72e2.nii.gz/MD5E-s179804--3fe1ca6c7fffb4fef91380772e4a72e2.nii.gz

SWU_4/sub-0025700/ses-2/mri/mwp1sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2z/5x/MD5E-s2586150--b3d57b4709fe9081f7cdd249375d3809.nii.gz/MD5E-s2586150--b3d57b4709fe9081f7cdd249375d3809.nii.gz

SWU_4/sub-0025700/ses-2/mri/mwp2sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/8f/MD5E-s2325437--96c9742f7580a1007f71ab46270ca9ad.nii.gz/MD5E-s2325437--96c9742f7580a1007f71ab46270ca9ad.nii.gz

SWU_4/sub-0025700/ses-2/mri/mwp3sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V3/Zv/MD5E-s2485240--c5f4d7226197bd2567adcce74faf8482.nii.gz/MD5E-s2485240--c5f4d7226197bd2567adcce74faf8482.nii.gz

SWU_4/sub-0025700/ses-2/mri/neuromorphometrics_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025700/ses-2/mri/neuromorphometrics_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QP/fK/MD5E-s206626--47bafb3d3528665cc4d2b0039c988ac1.nii.gz/MD5E-s206626--47bafb3d3528665cc4d2b0039c988ac1.nii.gz

SWU_4/sub-0025700/ses-2/mri/p0sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/95/jG/MD5E-s668598--a402b5f0651ed762a1dea8914bf32eee.nii.gz/MD5E-s668598--a402b5f0651ed762a1dea8914bf32eee.nii.gz

SWU_4/sub-0025700/ses-2/mri/p1sub-0025700_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025700/ses-2/mri/p2sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/6W/MD5E-s480209--097f451869897d1b3d8a90cf86c98da7.nii.gz/MD5E-s480209--097f451869897d1b3d8a90cf86c98da7.nii.gz

SWU_4/sub-0025700/ses-2/mri/p3sub-0025700_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025700/ses-2/mri/rp1sub-0025700_ses-2_run-1_T1w_affine.nii.gz

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+../../../../.git/annex/objects/M2/0g/MD5E-s462017--e37dbd2c4b604d507eb060efc6176d1a.nii.gz/MD5E-s462017--e37dbd2c4b604d507eb060efc6176d1a.nii.gz

SWU_4/sub-0025700/ses-2/mri/rp2sub-0025700_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025700/ses-2/mri/rp3sub-0025700_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025700/ses-2/mri/t_sub-0025700_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025700/ses-2/mri/t_sub-0025700_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/m7/MD5E-s284--eb2776de2d62dc9476cb32da7ebe2956.mat/MD5E-s284--eb2776de2d62dc9476cb32da7ebe2956.mat

SWU_4/sub-0025700/ses-2/mri/thalamus_sub-0025700_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025700/ses-2/mri/thalamus_sub-0025700_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vK/2X/MD5E-s16884--36ae9ec056c1364ac16b8a0c21de6f26.nii.gz/MD5E-s16884--36ae9ec056c1364ac16b8a0c21de6f26.nii.gz

SWU_4/sub-0025700/ses-2/mri/wj_sub-0025700_ses-2_run-1_T1w.nii.gz

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