[DATALAD RUNCMD] Compute SWU_4/sub-0025707/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025707/ses-2/anat/sub-0025707_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025707/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025707/ses-2/label/catROI_sub-0025707_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gp/ZG/MD5E-s61331--de7cd219deac513cb13a7e53f8590241.mat/MD5E-s61331--de7cd219deac513cb13a7e53f8590241.mat

SWU_4/sub-0025707/ses-2/label/catROI_sub-0025707_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PP/Qq/MD5E-s188838--45f6946cb72f0ff69b053127afbf50c8.xml/MD5E-s188838--45f6946cb72f0ff69b053127afbf50c8.xml

SWU_4/sub-0025707/ses-2/label/catROIs_sub-0025707_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/3Z/MD5E-s119961--86932d9a4af1c766a5d82712be8185d7.mat/MD5E-s119961--86932d9a4af1c766a5d82712be8185d7.mat

SWU_4/sub-0025707/ses-2/label/catROIs_sub-0025707_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fJ/xz/MD5E-s332119--97e8151d1ce4d4b3bd5735f4339465ea.xml/MD5E-s332119--97e8151d1ce4d4b3bd5735f4339465ea.xml

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1M/QJ/MD5E-s175001--a3cf98f86f3bec94b31bb67357a1219b.nii.gz/MD5E-s175001--a3cf98f86f3bec94b31bb67357a1219b.nii.gz

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zw/Wv/MD5E-s194960--f5987013cbba9df89d539766e615f0b4.nii.gz/MD5E-s194960--f5987013cbba9df89d539766e615f0b4.nii.gz

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/P2/MD5E-s263409--36c0a844712ddaf31f008e55d9e42d58.nii.gz/MD5E-s263409--36c0a844712ddaf31f008e55d9e42d58.nii.gz

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025707/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/21/MD5E-s291172--172aaecbd85c04c0dac72f6b0cb69563.nii.gz/MD5E-s291172--172aaecbd85c04c0dac72f6b0cb69563.nii.gz

SWU_4/sub-0025707/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025707/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j7/5z/MD5E-s25960--5350aaac774be713c493af82ea05a77b.nii.gz/MD5E-s25960--5350aaac774be713c493af82ea05a77b.nii.gz

SWU_4/sub-0025707/ses-2/mri/aal3_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025707/ses-2/mri/aal3_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M1/7g/MD5E-s196843--76e1ddf31c48ee2f2eb55f253f144d25.nii.gz/MD5E-s196843--76e1ddf31c48ee2f2eb55f253f144d25.nii.gz

SWU_4/sub-0025707/ses-2/mri/anatomy3_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025707/ses-2/mri/anatomy3_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M8/wF/MD5E-s141427--30c3a4b0c4143b3f649e7acf578c2c39.nii.gz/MD5E-s141427--30c3a4b0c4143b3f649e7acf578c2c39.nii.gz

SWU_4/sub-0025707/ses-2/mri/anon_misub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/3J/MD5E-s9782717--8b22b6fd02be3099bea553387f2de2b0.nii.gz/MD5E-s9782717--8b22b6fd02be3099bea553387f2de2b0.nii.gz

SWU_4/sub-0025707/ses-2/mri/anon_msub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4P/mv/MD5E-s11112077--d369948adb1bd81e914a2c0c2ca35894.nii.gz/MD5E-s11112077--d369948adb1bd81e914a2c0c2ca35894.nii.gz

SWU_4/sub-0025707/ses-2/mri/cat_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vP/wK/MD5E-s105310--12996e4c46165e9c931a35be9d304962.nii.gz/MD5E-s105310--12996e4c46165e9c931a35be9d304962.nii.gz

SWU_4/sub-0025707/ses-2/mri/cobra_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025707/ses-2/mri/cobra_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8G/Z2/MD5E-s50430--0b717311959ab18bc93b3a145696ea8a.nii.gz/MD5E-s50430--0b717311959ab18bc93b3a145696ea8a.nii.gz

SWU_4/sub-0025707/ses-2/mri/hammers_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025707/ses-2/mri/hammers_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/Xw/MD5E-s155529--9aa26f8854dbd3f73517476f70f83824.nii.gz/MD5E-s155529--9aa26f8854dbd3f73517476f70f83824.nii.gz

SWU_4/sub-0025707/ses-2/mri/ibsr_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025707/ses-2/mri/ibsr_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WM/J2/MD5E-s163529--014bc3aeb7eab078868db34bcedcb3c0.nii.gz/MD5E-s163529--014bc3aeb7eab078868db34bcedcb3c0.nii.gz

SWU_4/sub-0025707/ses-2/mri/it_sub-0025707_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/7q/MD5E-s283--ded5a068a6e891d1623777467df2bc21.mat/MD5E-s283--ded5a068a6e891d1623777467df2bc21.mat

SWU_4/sub-0025707/ses-2/mri/it_sub-0025707_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/p3/MD5E-s284--b706d7860fcbec3fa0dcece56202ba9b.mat/MD5E-s284--b706d7860fcbec3fa0dcece56202ba9b.mat

SWU_4/sub-0025707/ses-2/mri/iy_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/X5/MD5E-s50046737--c12b1a1f2dfafba855a83ac5a1a2d4ed.nii.gz/MD5E-s50046737--c12b1a1f2dfafba855a83ac5a1a2d4ed.nii.gz

SWU_4/sub-0025707/ses-2/mri/julichbrain_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025707/ses-2/mri/julichbrain_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/0X/MD5E-s209412--5c22be44e853c1ef75720c37084d3cb6.nii.gz/MD5E-s209412--5c22be44e853c1ef75720c37084d3cb6.nii.gz

SWU_4/sub-0025707/ses-2/mri/lpba40_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025707/ses-2/mri/lpba40_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/QQ/MD5E-s151352--01ea162ff3719be201a5e77b6c593b8b.nii.gz/MD5E-s151352--01ea162ff3719be201a5e77b6c593b8b.nii.gz

SWU_4/sub-0025707/ses-2/mri/m0wp1sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/9k/MD5E-s2590040--203f17abf29b6dda14481b2a8bfc3922.nii.gz/MD5E-s2590040--203f17abf29b6dda14481b2a8bfc3922.nii.gz

SWU_4/sub-0025707/ses-2/mri/m0wp2sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zj/8q/MD5E-s2322448--3713e7b61877977dcc599d3967834594.nii.gz/MD5E-s2322448--3713e7b61877977dcc599d3967834594.nii.gz

SWU_4/sub-0025707/ses-2/mri/m0wp3sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/v4/MD5E-s2587491--77de499a74e4d4f1ed92ffb23e3ac35e.nii.gz/MD5E-s2587491--77de499a74e4d4f1ed92ffb23e3ac35e.nii.gz

SWU_4/sub-0025707/ses-2/mri/mori_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025707/ses-2/mri/mori_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/56/f7/MD5E-s182270--377cdb8fa5107b909a342a800a8adc48.nii.gz/MD5E-s182270--377cdb8fa5107b909a342a800a8adc48.nii.gz

SWU_4/sub-0025707/ses-2/mri/mwp1sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8q/VJ/MD5E-s2592734--4e6632ce2f92de1df69a80b10281f4be.nii.gz/MD5E-s2592734--4e6632ce2f92de1df69a80b10281f4be.nii.gz

SWU_4/sub-0025707/ses-2/mri/mwp2sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/4g/MD5E-s2318010--ec605610ff6ee62e8f9fd80a58207c8a.nii.gz/MD5E-s2318010--ec605610ff6ee62e8f9fd80a58207c8a.nii.gz

SWU_4/sub-0025707/ses-2/mri/mwp3sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7V/x8/MD5E-s2587169--b8de027cd1ce04f9ecdba215c1892cf5.nii.gz/MD5E-s2587169--b8de027cd1ce04f9ecdba215c1892cf5.nii.gz

SWU_4/sub-0025707/ses-2/mri/neuromorphometrics_sub-0025707_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025707/ses-2/mri/neuromorphometrics_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025707/ses-2/mri/p0sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/wv/MD5E-s715951--7d1a57a897f37765e27ee232e80b2ef1.nii.gz/MD5E-s715951--7d1a57a897f37765e27ee232e80b2ef1.nii.gz

SWU_4/sub-0025707/ses-2/mri/p1sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025707/ses-2/mri/p2sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/MM/MD5E-s498222--6a3363b77c411a740fcf8625a5e759af.nii.gz/MD5E-s498222--6a3363b77c411a740fcf8625a5e759af.nii.gz

SWU_4/sub-0025707/ses-2/mri/p3sub-0025707_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025707/ses-2/mri/rp1sub-0025707_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025707/ses-2/mri/rp2sub-0025707_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025707/ses-2/mri/rp3sub-0025707_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025707/ses-2/mri/t_sub-0025707_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025707/ses-2/mri/t_sub-0025707_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x5/4m/MD5E-s284--e72288458b4cb9ccb21f8b21ebfcf897.mat/MD5E-s284--e72288458b4cb9ccb21f8b21ebfcf897.mat

SWU_4/sub-0025707/ses-2/mri/thalamus_sub-0025707_ses-2_run-1_T1w.csv

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SWU_4/sub-0025707/ses-2/mri/thalamus_sub-0025707_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025707/ses-2/mri/wj_sub-0025707_ses-2_run-1_T1w.nii.gz

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