[DATALAD RUNCMD] Compute NYU_2/sub-0025149/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025149/ses-1/anat/sub-0025149_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025149/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025149/ses-1/label/catROI_sub-0025149_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z1/X9/MD5E-s58044--08df2b94ecc0f8c920e432522a7a403c.mat/MD5E-s58044--08df2b94ecc0f8c920e432522a7a403c.mat

NYU_2/sub-0025149/ses-1/label/catROI_sub-0025149_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3G/z9/MD5E-s188786--fb38b3240b1c26f76c719947c0dbbf7b.xml/MD5E-s188786--fb38b3240b1c26f76c719947c0dbbf7b.xml

NYU_2/sub-0025149/ses-1/label/catROI_sub-0025149_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P5/2W/MD5E-s57956--b95bd6db109528d2ae5bcd84c2652697.mat/MD5E-s57956--b95bd6db109528d2ae5bcd84c2652697.mat

NYU_2/sub-0025149/ses-1/label/catROI_sub-0025149_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/58/J9/MD5E-s188918--357dee01fc242c9c76e6c29e18ba7fd1.xml/MD5E-s188918--357dee01fc242c9c76e6c29e18ba7fd1.xml

NYU_2/sub-0025149/ses-1/label/catROIs_sub-0025149_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p4/M6/MD5E-s120116--6ba0034b94b73a18710ec79a40c79c19.mat/MD5E-s120116--6ba0034b94b73a18710ec79a40c79c19.mat

NYU_2/sub-0025149/ses-1/label/catROIs_sub-0025149_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/M5/MD5E-s332206--4617ff895e0c3460cff3b700ea17b14f.xml/MD5E-s332206--4617ff895e0c3460cff3b700ea17b14f.xml

NYU_2/sub-0025149/ses-1/label/catROIs_sub-0025149_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q2/qk/MD5E-s120153--8e092548ec37a562c3f07b6503ace7d9.mat/MD5E-s120153--8e092548ec37a562c3f07b6503ace7d9.mat

NYU_2/sub-0025149/ses-1/label/catROIs_sub-0025149_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mP/q6/MD5E-s332097--4590275642e4df09d4026e250d2b4a7a.xml/MD5E-s332097--4590275642e4df09d4026e250d2b4a7a.xml

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/v2/MD5E-s152293--70cf950c99adcbfee9674c32bd0121ce.nii.gz/MD5E-s152293--70cf950c99adcbfee9674c32bd0121ce.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J6/v1/MD5E-s152182--0a0ac3c24898af00a512d38df14b6bb8.nii.gz/MD5E-s152182--0a0ac3c24898af00a512d38df14b6bb8.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gz/k0/MD5E-s168676--bdb023403c17daf517970f198fbb7c31.nii.gz/MD5E-s168676--bdb023403c17daf517970f198fbb7c31.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6x/3X/MD5E-s168028--4024e12fc7054fdc89b79c213cd0366b.nii.gz/MD5E-s168028--4024e12fc7054fdc89b79c213cd0366b.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gj/m7/MD5E-s227318--3cb26f11f43666bc4c254a4850dbfc75.nii.gz/MD5E-s227318--3cb26f11f43666bc4c254a4850dbfc75.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zQ/Jx/MD5E-s226911--f1a4e983bde5f2158904c80d8322235e.nii.gz/MD5E-s226911--f1a4e983bde5f2158904c80d8322235e.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/p9/MD5E-s251322--0dab572931c0671fa6f1ec0e7b73da54.nii.gz/MD5E-s251322--0dab572931c0671fa6f1ec0e7b73da54.nii.gz

NYU_2/sub-0025149/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/F3/WW/MD5E-s250556--7ed80d98c42e656ce2641d07a33d2a2e.nii.gz/MD5E-s250556--7ed80d98c42e656ce2641d07a33d2a2e.nii.gz

NYU_2/sub-0025149/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wx/0W/MD5E-s19122--d0a162863a2b785be97ef6b8281bd626.nii.gz/MD5E-s19122--d0a162863a2b785be97ef6b8281bd626.nii.gz

NYU_2/sub-0025149/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MZ/qm/MD5E-s19083--17568eb402f22e5664d424db272ca7ca.nii.gz/MD5E-s19083--17568eb402f22e5664d424db272ca7ca.nii.gz

NYU_2/sub-0025149/ses-1/mri/aal3_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/X8/MD5E-s170691--e6504f5f48f85cbdf78b5ad73994edd5.nii.gz/MD5E-s170691--e6504f5f48f85cbdf78b5ad73994edd5.nii.gz

NYU_2/sub-0025149/ses-1/mri/aal3_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FW/63/MD5E-s170767--e1349169d0d6ac4cc03307113ad490fd.nii.gz/MD5E-s170767--e1349169d0d6ac4cc03307113ad490fd.nii.gz

NYU_2/sub-0025149/ses-1/mri/anatomy3_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4G/3g/MD5E-s119832--b2cabc9dcf65b43265190571d72169f7.nii.gz/MD5E-s119832--b2cabc9dcf65b43265190571d72169f7.nii.gz

NYU_2/sub-0025149/ses-1/mri/anatomy3_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qm/20/MD5E-s120221--62c94725c247b8bfd909f1cdb4b10153.nii.gz/MD5E-s120221--62c94725c247b8bfd909f1cdb4b10153.nii.gz

NYU_2/sub-0025149/ses-1/mri/anon_misub-0025149_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/wJ/XF/MD5E-s4214551--9293664d44f376c7fc0fb90218c0db24.nii.gz/MD5E-s4214551--9293664d44f376c7fc0fb90218c0db24.nii.gz

NYU_2/sub-0025149/ses-1/mri/anon_misub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kk/qW/MD5E-s4302020--c2f79360478b5ba6cfad791e0e0f0de5.nii.gz/MD5E-s4302020--c2f79360478b5ba6cfad791e0e0f0de5.nii.gz

NYU_2/sub-0025149/ses-1/mri/anon_msub-0025149_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pK/50/MD5E-s9554561--251151fa4dcb223e5d861b98c6c04559.nii.gz/MD5E-s9554561--251151fa4dcb223e5d861b98c6c04559.nii.gz

NYU_2/sub-0025149/ses-1/mri/anon_msub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025149/ses-1/mri/cat_sub-0025149_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/4q/Zv/MD5E-s92873--406403c92d6d5a5f545c836395d86f05.nii.gz/MD5E-s92873--406403c92d6d5a5f545c836395d86f05.nii.gz

NYU_2/sub-0025149/ses-1/mri/cat_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kf/3W/MD5E-s93476--46e35a04b6c33464503cead372fc1351.nii.gz/MD5E-s93476--46e35a04b6c33464503cead372fc1351.nii.gz

NYU_2/sub-0025149/ses-1/mri/cobra_sub-0025149_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/M8/71/MD5E-s39522--d942e306bec3491a72316553744245cc.nii.gz/MD5E-s39522--d942e306bec3491a72316553744245cc.nii.gz

NYU_2/sub-0025149/ses-1/mri/cobra_sub-0025149_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025149/ses-1/mri/hammers_sub-0025149_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/ZK/Vq/MD5E-s134470--a3a154c1fcc8b238e7d54960db58643c.nii.gz/MD5E-s134470--a3a154c1fcc8b238e7d54960db58643c.nii.gz

NYU_2/sub-0025149/ses-1/mri/hammers_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/ibsr_sub-0025149_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025149/ses-1/mri/ibsr_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/it_sub-0025149_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jX/ZX/MD5E-s284--9f92da2a10fc8bd262448b2cabcc588e.mat/MD5E-s284--9f92da2a10fc8bd262448b2cabcc588e.mat

NYU_2/sub-0025149/ses-1/mri/it_sub-0025149_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025149/ses-1/mri/it_sub-0025149_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025149/ses-1/mri/it_sub-0025149_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025149/ses-1/mri/iy_sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/iy_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/julichbrain_sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/julichbrain_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/lpba40_sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/lpba40_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp1sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp1sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp2sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp2sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp3sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/m0wp3sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/mori_sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/mori_sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/mwp1sub-0025149_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/mwp1sub-0025149_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025149/ses-1/mri/mwp2sub-0025149_ses-1_run-1_T1w.nii.gz

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