[DATALAD RUNCMD] Compute NYU_2/sub-0025143/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025143/ses-1/anat/sub-0025143_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025143/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025143/ses-1/label/catROI_sub-0025143_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qv/mm/MD5E-s58322--bbfcdb00e4b67e9bd1c2565111e007a2.mat/MD5E-s58322--bbfcdb00e4b67e9bd1c2565111e007a2.mat

NYU_2/sub-0025143/ses-1/label/catROI_sub-0025143_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/qk/MD5E-s188870--631223656ddbbefd5c92abc0516f3ee8.xml/MD5E-s188870--631223656ddbbefd5c92abc0516f3ee8.xml

NYU_2/sub-0025143/ses-1/label/catROI_sub-0025143_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5q/mK/MD5E-s58260--0767e793c6d006941ec4c09abeb00c00.mat/MD5E-s58260--0767e793c6d006941ec4c09abeb00c00.mat

NYU_2/sub-0025143/ses-1/label/catROI_sub-0025143_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pg/7F/MD5E-s188806--35bc66928c20b3a513b4ce1748c1cf52.xml/MD5E-s188806--35bc66928c20b3a513b4ce1748c1cf52.xml

NYU_2/sub-0025143/ses-1/label/catROIs_sub-0025143_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wP/gg/MD5E-s120248--e220e8400eb45153507ce171550bf0ab.mat/MD5E-s120248--e220e8400eb45153507ce171550bf0ab.mat

NYU_2/sub-0025143/ses-1/label/catROIs_sub-0025143_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/fJ/MD5E-s332238--d9a0dddedc34c876e2d4fbb8475dc8ab.xml/MD5E-s332238--d9a0dddedc34c876e2d4fbb8475dc8ab.xml

NYU_2/sub-0025143/ses-1/label/catROIs_sub-0025143_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JV/9w/MD5E-s120176--ae67eebb940324a6f2b6b14f71391a73.mat/MD5E-s120176--ae67eebb940324a6f2b6b14f71391a73.mat

NYU_2/sub-0025143/ses-1/label/catROIs_sub-0025143_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pq/pw/MD5E-s332126--0e47514c6fd4fa5ccd1024b6fad47a44.xml/MD5E-s332126--0e47514c6fd4fa5ccd1024b6fad47a44.xml

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z3/zk/MD5E-s153671--b45e5107bfe2f7ef5734f9195d0e816c.nii.gz/MD5E-s153671--b45e5107bfe2f7ef5734f9195d0e816c.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x9/Z5/MD5E-s153124--d128f1d82cc27a93ff21886536f6298f.nii.gz/MD5E-s153124--d128f1d82cc27a93ff21886536f6298f.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/6Q/MD5E-s171481--f9b7fe643ff60087a8cda98da76503e2.nii.gz/MD5E-s171481--f9b7fe643ff60087a8cda98da76503e2.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9z/Gq/MD5E-s170833--4812f0b8e8f1d598d8d082b95babe722.nii.gz/MD5E-s170833--4812f0b8e8f1d598d8d082b95babe722.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/4m/MD5E-s230066--7ca2ab9a9b42272c083d1a00dfd3692a.nii.gz/MD5E-s230066--7ca2ab9a9b42272c083d1a00dfd3692a.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g3/kP/MD5E-s229897--27a4a26e426661bac269b0f90432098c.nii.gz/MD5E-s229897--27a4a26e426661bac269b0f90432098c.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/8K/MD5E-s255679--d5ae0ada22be666c483ff18b62e9f606.nii.gz/MD5E-s255679--d5ae0ada22be666c483ff18b62e9f606.nii.gz

NYU_2/sub-0025143/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/QX/f1/MD5E-s255080--2ca4ff9d6f0bcbc38b2593484fc553a5.nii.gz/MD5E-s255080--2ca4ff9d6f0bcbc38b2593484fc553a5.nii.gz

NYU_2/sub-0025143/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/3v/MD5E-s20112--2fca15352f6aa9ca90f7569390c9330e.nii.gz/MD5E-s20112--2fca15352f6aa9ca90f7569390c9330e.nii.gz

NYU_2/sub-0025143/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8q/5v/MD5E-s19799--02bcd8d82ccc663e76c12e47859495e2.nii.gz/MD5E-s19799--02bcd8d82ccc663e76c12e47859495e2.nii.gz

NYU_2/sub-0025143/ses-1/mri/aal3_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v7/2V/MD5E-s175770--e45f2e8aed8d753d9320c392512c4a00.nii.gz/MD5E-s175770--e45f2e8aed8d753d9320c392512c4a00.nii.gz

NYU_2/sub-0025143/ses-1/mri/aal3_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x3/F8/MD5E-s176589--f8e5164f63631cf57a6d0551837899a0.nii.gz/MD5E-s176589--f8e5164f63631cf57a6d0551837899a0.nii.gz

NYU_2/sub-0025143/ses-1/mri/anatomy3_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6v/pV/MD5E-s120425--d2ece95ac5caf94002e1bc3160326323.nii.gz/MD5E-s120425--d2ece95ac5caf94002e1bc3160326323.nii.gz

NYU_2/sub-0025143/ses-1/mri/anatomy3_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FF/6w/MD5E-s120327--b6068f7f59e5f068155c601d51d3db8b.nii.gz/MD5E-s120327--b6068f7f59e5f068155c601d51d3db8b.nii.gz

NYU_2/sub-0025143/ses-1/mri/anon_misub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MG/M3/MD5E-s4566264--b854540a7acb6434f31ccf718bfa30c9.nii.gz/MD5E-s4566264--b854540a7acb6434f31ccf718bfa30c9.nii.gz

NYU_2/sub-0025143/ses-1/mri/anon_misub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3W/kX/MD5E-s4561612--224223f32e122be73806ab9ac927bf06.nii.gz/MD5E-s4561612--224223f32e122be73806ab9ac927bf06.nii.gz

NYU_2/sub-0025143/ses-1/mri/anon_msub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j3/M7/MD5E-s7527541--88f8e87ad1d558ef6327a44ee423ac8a.nii.gz/MD5E-s7527541--88f8e87ad1d558ef6327a44ee423ac8a.nii.gz

NYU_2/sub-0025143/ses-1/mri/anon_msub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gv/Fg/MD5E-s7976763--9852d6cbc5d22c0bc349d83830d820e8.nii.gz/MD5E-s7976763--9852d6cbc5d22c0bc349d83830d820e8.nii.gz

NYU_2/sub-0025143/ses-1/mri/cat_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z8/3g/MD5E-s92493--fb099f18f897a81e7d77c2740dd3f452.nii.gz/MD5E-s92493--fb099f18f897a81e7d77c2740dd3f452.nii.gz

NYU_2/sub-0025143/ses-1/mri/cat_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4q/73/MD5E-s97890--210fa20b4d9ac22885a2dee09f1f40ce.nii.gz/MD5E-s97890--210fa20b4d9ac22885a2dee09f1f40ce.nii.gz

NYU_2/sub-0025143/ses-1/mri/cobra_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2g/zJ/MD5E-s42362--7e5cb28005f1c5a28825718ddd2c2325.nii.gz/MD5E-s42362--7e5cb28005f1c5a28825718ddd2c2325.nii.gz

NYU_2/sub-0025143/ses-1/mri/cobra_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025143/ses-1/mri/hammers_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/kq/MD5E-s134938--53784b4a11216aeb7eddd5b20a224e32.nii.gz/MD5E-s134938--53784b4a11216aeb7eddd5b20a224e32.nii.gz

NYU_2/sub-0025143/ses-1/mri/hammers_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025143/ses-1/mri/ibsr_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/6q/MD5E-s145369--a50525b22ff910803799ee381eb1954b.nii.gz/MD5E-s145369--a50525b22ff910803799ee381eb1954b.nii.gz

NYU_2/sub-0025143/ses-1/mri/ibsr_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025143/ses-1/mri/it_sub-0025143_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/G9/MD5E-s282--24867ef260dfd702dc1768bca7789138.mat/MD5E-s282--24867ef260dfd702dc1768bca7789138.mat

NYU_2/sub-0025143/ses-1/mri/it_sub-0025143_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/1X/MD5E-s281--f41fcf51e54427571db18b02592e018d.mat/MD5E-s281--f41fcf51e54427571db18b02592e018d.mat

NYU_2/sub-0025143/ses-1/mri/it_sub-0025143_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PQ/q5/MD5E-s283--e3f77c47064509add8fa566c4ce73d6f.mat/MD5E-s283--e3f77c47064509add8fa566c4ce73d6f.mat

NYU_2/sub-0025143/ses-1/mri/it_sub-0025143_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025143/ses-1/mri/iy_sub-0025143_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/8g/2v/MD5E-s37283389--d1e92bc1011c01495508e659bd4cde87.nii.gz/MD5E-s37283389--d1e92bc1011c01495508e659bd4cde87.nii.gz

NYU_2/sub-0025143/ses-1/mri/iy_sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/julichbrain_sub-0025143_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025143/ses-1/mri/julichbrain_sub-0025143_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025143/ses-1/mri/lpba40_sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/lpba40_sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp1sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp1sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp2sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp2sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp3sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/m0wp3sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/mori_sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/mori_sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/mwp1sub-0025143_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/mwp1sub-0025143_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025143/ses-1/mri/mwp2sub-0025143_ses-1_run-1_T1w.nii.gz

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