[DATALAD RUNCMD] Compute SWU_4/sub-0025766/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025766/ses-2/anat/sub-0025766_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025766/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025766/ses-2/label/catROI_sub-0025766_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mJ/99/MD5E-s61278--eb3d8b26ac64566892777c4f4134d3ef.mat/MD5E-s61278--eb3d8b26ac64566892777c4f4134d3ef.mat

SWU_4/sub-0025766/ses-2/label/catROI_sub-0025766_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8m/Pw/MD5E-s188849--e1d15aac0bbb7f7340477408c2196bd0.xml/MD5E-s188849--e1d15aac0bbb7f7340477408c2196bd0.xml

SWU_4/sub-0025766/ses-2/label/catROIs_sub-0025766_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7Z/p7/MD5E-s120142--83bb3ede0715351efac2e82ef2514656.mat/MD5E-s120142--83bb3ede0715351efac2e82ef2514656.mat

SWU_4/sub-0025766/ses-2/label/catROIs_sub-0025766_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/86/MD5E-s332149--f896b507a3b024d1acb7a4e98e26b256.xml/MD5E-s332149--f896b507a3b024d1acb7a4e98e26b256.xml

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/Qp/MD5E-s169613--1b0b66e983ccef92744ee7a8ca2d2b0c.nii.gz/MD5E-s169613--1b0b66e983ccef92744ee7a8ca2d2b0c.nii.gz

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5k/9z/MD5E-s188038--6c652b1cb581bfe69ffb8588146a69cc.nii.gz/MD5E-s188038--6c652b1cb581bfe69ffb8588146a69cc.nii.gz

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/45/MD5E-s254604--ec712e0a299dfecba94ee947d7d66e1f.nii.gz/MD5E-s254604--ec712e0a299dfecba94ee947d7d66e1f.nii.gz

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025766/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/km/MD5E-s281960--490b3a411622a5b6537abadca235d3e9.nii.gz/MD5E-s281960--490b3a411622a5b6537abadca235d3e9.nii.gz

SWU_4/sub-0025766/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025766/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/ZM/MD5E-s24351--fae592ae74dfab8ad4292074125fa941.nii.gz/MD5E-s24351--fae592ae74dfab8ad4292074125fa941.nii.gz

SWU_4/sub-0025766/ses-2/mri/aal3_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025766/ses-2/mri/aal3_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QJ/6v/MD5E-s187782--815a03f0350b0e20525ca1ef0ab68455.nii.gz/MD5E-s187782--815a03f0350b0e20525ca1ef0ab68455.nii.gz

SWU_4/sub-0025766/ses-2/mri/anatomy3_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025766/ses-2/mri/anatomy3_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/Jx/MD5E-s138142--9122e68e29dc78d682087c6110c20afa.nii.gz/MD5E-s138142--9122e68e29dc78d682087c6110c20afa.nii.gz

SWU_4/sub-0025766/ses-2/mri/anon_misub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qV/wG/MD5E-s9358222--d8fd489f8552388c3477d7fe1fa7cdc3.nii.gz/MD5E-s9358222--d8fd489f8552388c3477d7fe1fa7cdc3.nii.gz

SWU_4/sub-0025766/ses-2/mri/anon_msub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gg/49/MD5E-s9961428--e42d2c4f55846a53eaa8dcd1a2215052.nii.gz/MD5E-s9961428--e42d2c4f55846a53eaa8dcd1a2215052.nii.gz

SWU_4/sub-0025766/ses-2/mri/cat_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/38/pP/MD5E-s102356--73c8280ff4e0258c7d6ad962c0fea245.nii.gz/MD5E-s102356--73c8280ff4e0258c7d6ad962c0fea245.nii.gz

SWU_4/sub-0025766/ses-2/mri/cobra_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025766/ses-2/mri/cobra_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z9/pW/MD5E-s47245--ec1c71f0dac9f0e2d9537d4ba97d550a.nii.gz/MD5E-s47245--ec1c71f0dac9f0e2d9537d4ba97d550a.nii.gz

SWU_4/sub-0025766/ses-2/mri/hammers_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025766/ses-2/mri/hammers_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4x/65/MD5E-s149645--745a72ddf8243474e6e7a7ce48dfb88d.nii.gz/MD5E-s149645--745a72ddf8243474e6e7a7ce48dfb88d.nii.gz

SWU_4/sub-0025766/ses-2/mri/ibsr_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025766/ses-2/mri/ibsr_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QZ/zZ/MD5E-s157626--8e4a253acecd9bf0adef1f53138189e4.nii.gz/MD5E-s157626--8e4a253acecd9bf0adef1f53138189e4.nii.gz

SWU_4/sub-0025766/ses-2/mri/it_sub-0025766_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/93/jg/MD5E-s282--a2f1ae10bc42c7b123a0ad497f6f485c.mat/MD5E-s282--a2f1ae10bc42c7b123a0ad497f6f485c.mat

SWU_4/sub-0025766/ses-2/mri/it_sub-0025766_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/Wz/MD5E-s283--a9d7791f6d615601d054ba572add6dda.mat/MD5E-s283--a9d7791f6d615601d054ba572add6dda.mat

SWU_4/sub-0025766/ses-2/mri/iy_sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7v/5m/MD5E-s47516428--d11b7a37d6f05248cb5eb4a4108abb3a.nii.gz/MD5E-s47516428--d11b7a37d6f05248cb5eb4a4108abb3a.nii.gz

SWU_4/sub-0025766/ses-2/mri/julichbrain_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025766/ses-2/mri/julichbrain_sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/lpba40_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025766/ses-2/mri/lpba40_sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/m0wp1sub-0025766_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/WX/MD5E-s2570655--f0f761787d16285c05470a8c0b85adcd.nii.gz/MD5E-s2570655--f0f761787d16285c05470a8c0b85adcd.nii.gz

SWU_4/sub-0025766/ses-2/mri/m0wp2sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/m0wp3sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/mori_sub-0025766_ses-2_run-1_T1w.csv

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SWU_4/sub-0025766/ses-2/mri/mori_sub-0025766_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Wp/Z0/MD5E-s175406--8ffc4eca99a5cebf334e89071ff135af.nii.gz/MD5E-s175406--8ffc4eca99a5cebf334e89071ff135af.nii.gz

SWU_4/sub-0025766/ses-2/mri/mwp1sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/mwp2sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/mwp3sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/neuromorphometrics_sub-0025766_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025766/ses-2/mri/neuromorphometrics_sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/p0sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/p1sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/p2sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/p3sub-0025766_ses-2_run-1_T1w.nii.gz

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SWU_4/sub-0025766/ses-2/mri/rp1sub-0025766_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025766/ses-2/mri/rp2sub-0025766_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025766/ses-2/mri/rp3sub-0025766_ses-2_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025766/ses-2/mri/t_sub-0025766_ses-2_run-1_T1w_affine_reorient.mat

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SWU_4/sub-0025766/ses-2/mri/t_sub-0025766_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025766/ses-2/mri/thalamus_sub-0025766_ses-2_run-1_T1w.csv

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SWU_4/sub-0025766/ses-2/mri/thalamus_sub-0025766_ses-2_run-1_T1w.nii.gz

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