[DATALAD RUNCMD] Compute LMU_1/sub-0025360/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025360/ses-1/anat/sub-0025360_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025360/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025360/ses-1/label/catROI_sub-0025360_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z2/X2/MD5E-s57743--27336a95751424fed7ffb733ad77c38a.mat/MD5E-s57743--27336a95751424fed7ffb733ad77c38a.mat

LMU_1/sub-0025360/ses-1/label/catROI_sub-0025360_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q9/jK/MD5E-s188942--dc65471cc17c30923f0d99d04795dff2.xml/MD5E-s188942--dc65471cc17c30923f0d99d04795dff2.xml

LMU_1/sub-0025360/ses-1/label/catROIs_sub-0025360_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f9/Gp/MD5E-s120054--7b05d794171f8f642d953be151c6aa5a.mat/MD5E-s120054--7b05d794171f8f642d953be151c6aa5a.mat

LMU_1/sub-0025360/ses-1/label/catROIs_sub-0025360_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8M/pV/MD5E-s332105--fdbeef990854e676b140214206fe3960.xml/MD5E-s332105--fdbeef990854e676b140214206fe3960.xml

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KQ/k6/MD5E-s207747--2c96eb463f3184b742d215b115a7d8a7.nii.gz/MD5E-s207747--2c96eb463f3184b742d215b115a7d8a7.nii.gz

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/Gz/MD5E-s233692--c620d1c9817d019719b12a613b7d7bc9.nii.gz/MD5E-s233692--c620d1c9817d019719b12a613b7d7bc9.nii.gz

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/Vg/MD5E-s298925--13b3568e81b372cf99f41d4cb20554d5.nii.gz/MD5E-s298925--13b3568e81b372cf99f41d4cb20554d5.nii.gz

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025360/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/GP/MD5E-s331899--3aad460e63008d972ba9060787b6f38d.nii.gz/MD5E-s331899--3aad460e63008d972ba9060787b6f38d.nii.gz

LMU_1/sub-0025360/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025360/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/5w/MD5E-s30009--a979ec573418c6d922bc6742598f76b9.nii.gz/MD5E-s30009--a979ec573418c6d922bc6742598f76b9.nii.gz

LMU_1/sub-0025360/ses-1/mri/aal3_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025360/ses-1/mri/aal3_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gw/JF/MD5E-s241547--d30a6249ad3cfeb0f7bddb7c33e6e921.nii.gz/MD5E-s241547--d30a6249ad3cfeb0f7bddb7c33e6e921.nii.gz

LMU_1/sub-0025360/ses-1/mri/anatomy3_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025360/ses-1/mri/anatomy3_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/Wq/MD5E-s167624--c50ae01b916d479064c49867373c189d.nii.gz/MD5E-s167624--c50ae01b916d479064c49867373c189d.nii.gz

LMU_1/sub-0025360/ses-1/mri/anon_misub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g2/mJ/MD5E-s5654186--6936da90e5fee9e1118a63023a697932.nii.gz/MD5E-s5654186--6936da90e5fee9e1118a63023a697932.nii.gz

LMU_1/sub-0025360/ses-1/mri/anon_msub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/6x/MD5E-s12410365--2b0aa41ae704462696f993a06193e55a.nii.gz/MD5E-s12410365--2b0aa41ae704462696f993a06193e55a.nii.gz

LMU_1/sub-0025360/ses-1/mri/cat_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/k4/MD5E-s124797--14f6ed0c053b3925ebfd3904dae0d7e3.nii.gz/MD5E-s124797--14f6ed0c053b3925ebfd3904dae0d7e3.nii.gz

LMU_1/sub-0025360/ses-1/mri/cobra_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025360/ses-1/mri/cobra_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/58/28/MD5E-s62443--3e81c507a303d04407ee35f5d0108a45.nii.gz/MD5E-s62443--3e81c507a303d04407ee35f5d0108a45.nii.gz

LMU_1/sub-0025360/ses-1/mri/hammers_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025360/ses-1/mri/hammers_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qz/pJ/MD5E-s185245--f42ec916484419809bd219f3922ffd66.nii.gz/MD5E-s185245--f42ec916484419809bd219f3922ffd66.nii.gz

LMU_1/sub-0025360/ses-1/mri/ibsr_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025360/ses-1/mri/ibsr_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/kg/MD5E-s192622--fad9c4652f66657c94fb0b8c1e981921.nii.gz/MD5E-s192622--fad9c4652f66657c94fb0b8c1e981921.nii.gz

LMU_1/sub-0025360/ses-1/mri/it_sub-0025360_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/42/MD5E-s284--80d9225b26098db6294eb4a50c71267a.mat/MD5E-s284--80d9225b26098db6294eb4a50c71267a.mat

LMU_1/sub-0025360/ses-1/mri/it_sub-0025360_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/2K/MD5E-s284--64e6d0a1b9b59ef85cc731cc7b0f2582.mat/MD5E-s284--64e6d0a1b9b59ef85cc731cc7b0f2582.mat

LMU_1/sub-0025360/ses-1/mri/iy_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PG/K4/MD5E-s54817251--22c7394768b90f536fd2f27ad282fe05.nii.gz/MD5E-s54817251--22c7394768b90f536fd2f27ad282fe05.nii.gz

LMU_1/sub-0025360/ses-1/mri/julichbrain_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025360/ses-1/mri/julichbrain_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pv/Xj/MD5E-s248172--b8e4174977467c862f8e7c4c14f8adf3.nii.gz/MD5E-s248172--b8e4174977467c862f8e7c4c14f8adf3.nii.gz

LMU_1/sub-0025360/ses-1/mri/lpba40_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025360/ses-1/mri/lpba40_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gm/95/MD5E-s184024--ba04c7f4b2c241d75e521c2533ae3447.nii.gz/MD5E-s184024--ba04c7f4b2c241d75e521c2533ae3447.nii.gz

LMU_1/sub-0025360/ses-1/mri/m0wp1sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/Wm/MD5E-s2580569--2140deaeaf19c18fa046f82f156dfbc4.nii.gz/MD5E-s2580569--2140deaeaf19c18fa046f82f156dfbc4.nii.gz

LMU_1/sub-0025360/ses-1/mri/m0wp2sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/KG/MD5E-s2266133--4ff646db7dfc69d2d102c8e5807c27f3.nii.gz/MD5E-s2266133--4ff646db7dfc69d2d102c8e5807c27f3.nii.gz

LMU_1/sub-0025360/ses-1/mri/m0wp3sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/10/Mp/MD5E-s2484147--e641280b1bead66a01daa550a0f0b725.nii.gz/MD5E-s2484147--e641280b1bead66a01daa550a0f0b725.nii.gz

LMU_1/sub-0025360/ses-1/mri/mori_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025360/ses-1/mri/mori_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/mwp1sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zW/37/MD5E-s2584326--061cb23c8d8cadadf4ac68af373614e8.nii.gz/MD5E-s2584326--061cb23c8d8cadadf4ac68af373614e8.nii.gz

LMU_1/sub-0025360/ses-1/mri/mwp2sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/Qx/MD5E-s2263481--f9055168cb80e1cf83dd7ed6595c1145.nii.gz/MD5E-s2263481--f9055168cb80e1cf83dd7ed6595c1145.nii.gz

LMU_1/sub-0025360/ses-1/mri/mwp3sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/neuromorphometrics_sub-0025360_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/neuromorphometrics_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/p0sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X3/60/MD5E-s776847--f9db9f62e55ff3d81e923078a351462a.nii.gz/MD5E-s776847--f9db9f62e55ff3d81e923078a351462a.nii.gz

LMU_1/sub-0025360/ses-1/mri/p1sub-0025360_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025360/ses-1/mri/p2sub-0025360_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025360/ses-1/mri/p3sub-0025360_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025360/ses-1/mri/rp1sub-0025360_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025360/ses-1/mri/rp2sub-0025360_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025360/ses-1/mri/rp3sub-0025360_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025360/ses-1/mri/t_sub-0025360_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025360/ses-1/mri/t_sub-0025360_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/thalamus_sub-0025360_ses-1_run-1_T1w.csv

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LMU_1/sub-0025360/ses-1/mri/thalamus_sub-0025360_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025360/ses-1/mri/wj_sub-0025360_ses-1_run-1_T1w.nii.gz

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