[DATALAD RUNCMD] Compute SWU_4/sub-0025728/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025728/ses-1/anat/sub-0025728_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025728/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025728/ses-1/label/catROI_sub-0025728_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1X/x0/MD5E-s57877--913b56636a3c55f75bcc842f3cd8ce80.mat/MD5E-s57877--913b56636a3c55f75bcc842f3cd8ce80.mat

SWU_4/sub-0025728/ses-1/label/catROI_sub-0025728_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/wz/MD5E-s188539--bb128c8c636c72f5eb231a17684a60ce.xml/MD5E-s188539--bb128c8c636c72f5eb231a17684a60ce.xml

SWU_4/sub-0025728/ses-1/label/catROIs_sub-0025728_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Km/Pm/MD5E-s120048--65b49546346319ca0598ea80c6d7308a.mat/MD5E-s120048--65b49546346319ca0598ea80c6d7308a.mat

SWU_4/sub-0025728/ses-1/label/catROIs_sub-0025728_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7f/gg/MD5E-s332149--222d9fb63a8f07c68f0c764011886c8d.xml/MD5E-s332149--222d9fb63a8f07c68f0c764011886c8d.xml

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1G/Xv/MD5E-s171890--3a2de4465cc75f37bba07609cae88b43.nii.gz/MD5E-s171890--3a2de4465cc75f37bba07609cae88b43.nii.gz

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/Mq/MD5E-s191544--1e662cfe6d164a1b52ac0f9deab4efd9.nii.gz/MD5E-s191544--1e662cfe6d164a1b52ac0f9deab4efd9.nii.gz

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mP/2z/MD5E-s258981--17d4e504e4dc7e723949c33fafd37f2d.nii.gz/MD5E-s258981--17d4e504e4dc7e723949c33fafd37f2d.nii.gz

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025728/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zm/kK/MD5E-s287156--6053415d7cae548ac0cb042b120b04fe.nii.gz/MD5E-s287156--6053415d7cae548ac0cb042b120b04fe.nii.gz

SWU_4/sub-0025728/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025728/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/KP/MD5E-s25079--6e64511597b01739e7f09e37cae045bf.nii.gz/MD5E-s25079--6e64511597b01739e7f09e37cae045bf.nii.gz

SWU_4/sub-0025728/ses-1/mri/aal3_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025728/ses-1/mri/aal3_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/5p/MD5E-s194724--aa825099f01d98bfa3eeb035c9b9c35f.nii.gz/MD5E-s194724--aa825099f01d98bfa3eeb035c9b9c35f.nii.gz

SWU_4/sub-0025728/ses-1/mri/anatomy3_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025728/ses-1/mri/anatomy3_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/kz/MD5E-s141018--7e6a48696df3fa9bdf74a6a7f00e9696.nii.gz/MD5E-s141018--7e6a48696df3fa9bdf74a6a7f00e9696.nii.gz

SWU_4/sub-0025728/ses-1/mri/anon_misub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7W/fm/MD5E-s9444935--b9b4c0703de7d6aff46264e795df8d33.nii.gz/MD5E-s9444935--b9b4c0703de7d6aff46264e795df8d33.nii.gz

SWU_4/sub-0025728/ses-1/mri/anon_msub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7g/Pp/MD5E-s11789731--8dd577eb7a924ecac85f712f67e636ce.nii.gz/MD5E-s11789731--8dd577eb7a924ecac85f712f67e636ce.nii.gz

SWU_4/sub-0025728/ses-1/mri/cat_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qf/1j/MD5E-s102900--719089af121708a4b036ffca0fcd5545.nii.gz/MD5E-s102900--719089af121708a4b036ffca0fcd5545.nii.gz

SWU_4/sub-0025728/ses-1/mri/cobra_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025728/ses-1/mri/cobra_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2P/6j/MD5E-s51786--8a912d236d168aa48a437f7875298b10.nii.gz/MD5E-s51786--8a912d236d168aa48a437f7875298b10.nii.gz

SWU_4/sub-0025728/ses-1/mri/hammers_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025728/ses-1/mri/hammers_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pQ/P5/MD5E-s153286--6137032db11fbbe8a4ca65fb5cabe88a.nii.gz/MD5E-s153286--6137032db11fbbe8a4ca65fb5cabe88a.nii.gz

SWU_4/sub-0025728/ses-1/mri/ibsr_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025728/ses-1/mri/ibsr_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4w/16/MD5E-s161961--6066240852e1c8595a5c2455a44b0591.nii.gz/MD5E-s161961--6066240852e1c8595a5c2455a44b0591.nii.gz

SWU_4/sub-0025728/ses-1/mri/it_sub-0025728_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/66/MD5E-s283--eaf1911eeb382358921cbfbdeb09a34b.mat/MD5E-s283--eaf1911eeb382358921cbfbdeb09a34b.mat

SWU_4/sub-0025728/ses-1/mri/it_sub-0025728_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MZ/zx/MD5E-s283--d4568a3bbafdd6c8011a4a7c24c12dd4.mat/MD5E-s283--d4568a3bbafdd6c8011a4a7c24c12dd4.mat

SWU_4/sub-0025728/ses-1/mri/iy_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/2Z/MD5E-s47837764--67a1d3316fe0a89ef73c1a670c4a3971.nii.gz/MD5E-s47837764--67a1d3316fe0a89ef73c1a670c4a3971.nii.gz

SWU_4/sub-0025728/ses-1/mri/julichbrain_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025728/ses-1/mri/julichbrain_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/GG/MD5E-s206568--9964e05bb413322a1b79513b6737c675.nii.gz/MD5E-s206568--9964e05bb413322a1b79513b6737c675.nii.gz

SWU_4/sub-0025728/ses-1/mri/lpba40_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025728/ses-1/mri/lpba40_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m0/2G/MD5E-s149703--3fb35efda2e84b8655a454422f65ea74.nii.gz/MD5E-s149703--3fb35efda2e84b8655a454422f65ea74.nii.gz

SWU_4/sub-0025728/ses-1/mri/m0wp1sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mX/VZ/MD5E-s2585056--99e242a444fd901f7090b8eca2f328d1.nii.gz/MD5E-s2585056--99e242a444fd901f7090b8eca2f328d1.nii.gz

SWU_4/sub-0025728/ses-1/mri/m0wp2sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PJ/zq/MD5E-s2328801--b193584d14b0d7c2b6213238e353549f.nii.gz/MD5E-s2328801--b193584d14b0d7c2b6213238e353549f.nii.gz

SWU_4/sub-0025728/ses-1/mri/m0wp3sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/7k/MD5E-s2548072--c018da6417a5ad6d9fc5ac10fa6749c0.nii.gz/MD5E-s2548072--c018da6417a5ad6d9fc5ac10fa6749c0.nii.gz

SWU_4/sub-0025728/ses-1/mri/mori_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025728/ses-1/mri/mori_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m2/4G/MD5E-s179355--07d83132c8a80ddcfcf99412b7e8540c.nii.gz/MD5E-s179355--07d83132c8a80ddcfcf99412b7e8540c.nii.gz

SWU_4/sub-0025728/ses-1/mri/mwp1sub-0025728_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025728/ses-1/mri/mwp2sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7j/9m/MD5E-s2323784--ecae22a6e7ee90f347848fdeac1ac4f7.nii.gz/MD5E-s2323784--ecae22a6e7ee90f347848fdeac1ac4f7.nii.gz

SWU_4/sub-0025728/ses-1/mri/mwp3sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/neuromorphometrics_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025728/ses-1/mri/neuromorphometrics_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/p0sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6z/Fj/MD5E-s691444--8cea7c84fc68f7bf10c707590db97a06.nii.gz/MD5E-s691444--8cea7c84fc68f7bf10c707590db97a06.nii.gz

SWU_4/sub-0025728/ses-1/mri/p1sub-0025728_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025728/ses-1/mri/p2sub-0025728_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025728/ses-1/mri/p3sub-0025728_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025728/ses-1/mri/rp1sub-0025728_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025728/ses-1/mri/rp2sub-0025728_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025728/ses-1/mri/rp3sub-0025728_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025728/ses-1/mri/t_sub-0025728_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/t_sub-0025728_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/thalamus_sub-0025728_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/thalamus_sub-0025728_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025728/ses-1/mri/wj_sub-0025728_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025728/ses-1/surf/lh.area.sub-0025728_ses-1_run-1_T1w

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SWU_4/sub-0025728/ses-1/surf/lh.central.sub-0025728_ses-1_run-1_T1w.gii

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SWU_4/sub-0025728/ses-1/surf/lh.edgemap32k.sub-0025728_ses-1_run-1_T1w.mat

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