[DATALAD RUNCMD] Compute SWU_4/sub-0025646/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025646/ses-1/anat/sub-0025646_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025646/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025646/ses-1/label/catROI_sub-0025646_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x6/k0/MD5E-s57663--0c4e68fddd434746d76a274f8fd8b66d.mat/MD5E-s57663--0c4e68fddd434746d76a274f8fd8b66d.mat

SWU_4/sub-0025646/ses-1/label/catROI_sub-0025646_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/3p/MD5E-s188748--65ce25e7bc9ae49272f6977a6f177f61.xml/MD5E-s188748--65ce25e7bc9ae49272f6977a6f177f61.xml

SWU_4/sub-0025646/ses-1/label/catROIs_sub-0025646_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/25/MD5E-s120174--5c81af8e54bfdca34dc6b658c9cb1556.mat/MD5E-s120174--5c81af8e54bfdca34dc6b658c9cb1556.mat

SWU_4/sub-0025646/ses-1/label/catROIs_sub-0025646_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0p/jp/MD5E-s332174--5de97bc2bb74245089aaeeefcb82ebc4.xml/MD5E-s332174--5de97bc2bb74245089aaeeefcb82ebc4.xml

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M5/J6/MD5E-s156755--01f1bd91216fe30669838e718cfded94.nii.gz/MD5E-s156755--01f1bd91216fe30669838e718cfded94.nii.gz

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/8j/MD5E-s176005--78de93b7e2b0568422f77afa25fc3986.nii.gz/MD5E-s176005--78de93b7e2b0568422f77afa25fc3986.nii.gz

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/11/fM/MD5E-s237477--4cbd1c20780a7d9127a5ad04398f1c1d.nii.gz/MD5E-s237477--4cbd1c20780a7d9127a5ad04398f1c1d.nii.gz

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025646/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fq/Pf/MD5E-s264825--3d764be44d56394bb7ba48f981bde06f.nii.gz/MD5E-s264825--3d764be44d56394bb7ba48f981bde06f.nii.gz

SWU_4/sub-0025646/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025646/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X6/KM/MD5E-s24220--6858781c333361778a9886d15c56fb72.nii.gz/MD5E-s24220--6858781c333361778a9886d15c56fb72.nii.gz

SWU_4/sub-0025646/ses-1/mri/aal3_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025646/ses-1/mri/aal3_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/2Z/MD5E-s178510--89e8761a50c2aa66d7bd59616cc7e9b1.nii.gz/MD5E-s178510--89e8761a50c2aa66d7bd59616cc7e9b1.nii.gz

SWU_4/sub-0025646/ses-1/mri/anatomy3_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025646/ses-1/mri/anatomy3_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/8K/MD5E-s128535--dfaa4d261918ea2381e8f7bc8cbf6fdd.nii.gz/MD5E-s128535--dfaa4d261918ea2381e8f7bc8cbf6fdd.nii.gz

SWU_4/sub-0025646/ses-1/mri/anon_misub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x9/8p/MD5E-s9107286--33fde7a7e447e435daa181968e0b29f9.nii.gz/MD5E-s9107286--33fde7a7e447e435daa181968e0b29f9.nii.gz

SWU_4/sub-0025646/ses-1/mri/anon_msub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/wz/MD5E-s10402020--eee6ebffd61977055ba04e739f2e72fd.nii.gz/MD5E-s10402020--eee6ebffd61977055ba04e739f2e72fd.nii.gz

SWU_4/sub-0025646/ses-1/mri/cat_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/68/38/MD5E-s95329--cd34879b2e7660d99f76f615dbc6f4e8.nii.gz/MD5E-s95329--cd34879b2e7660d99f76f615dbc6f4e8.nii.gz

SWU_4/sub-0025646/ses-1/mri/cobra_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025646/ses-1/mri/cobra_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fG/M8/MD5E-s46665--9271289ebf3e380ae0c30dea546f53db.nii.gz/MD5E-s46665--9271289ebf3e380ae0c30dea546f53db.nii.gz

SWU_4/sub-0025646/ses-1/mri/hammers_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025646/ses-1/mri/hammers_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jx/5j/MD5E-s140419--bd77ecb0d908335e8400ea7aa1bc4a1a.nii.gz/MD5E-s140419--bd77ecb0d908335e8400ea7aa1bc4a1a.nii.gz

SWU_4/sub-0025646/ses-1/mri/ibsr_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025646/ses-1/mri/ibsr_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/Xg/MD5E-s148670--81253cc7863ed4cf98a20715bc1af2bb.nii.gz/MD5E-s148670--81253cc7863ed4cf98a20715bc1af2bb.nii.gz

SWU_4/sub-0025646/ses-1/mri/it_sub-0025646_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/z2/MD5E-s283--586e3d7e8f2dba257ded7aae3a36c7b6.mat/MD5E-s283--586e3d7e8f2dba257ded7aae3a36c7b6.mat

SWU_4/sub-0025646/ses-1/mri/it_sub-0025646_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/21/MD5E-s282--87ad59470c120d7ab0447cdfb1150681.mat/MD5E-s282--87ad59470c120d7ab0447cdfb1150681.mat

SWU_4/sub-0025646/ses-1/mri/iy_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F7/K0/MD5E-s43470133--8d61881f3141751f8ea302915aeb72e0.nii.gz/MD5E-s43470133--8d61881f3141751f8ea302915aeb72e0.nii.gz

SWU_4/sub-0025646/ses-1/mri/julichbrain_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025646/ses-1/mri/julichbrain_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W2/pV/MD5E-s188325--4e0de9e46410b5707d6519ae7b96fd56.nii.gz/MD5E-s188325--4e0de9e46410b5707d6519ae7b96fd56.nii.gz

SWU_4/sub-0025646/ses-1/mri/lpba40_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025646/ses-1/mri/lpba40_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/K6/MD5E-s137578--afcdaaaa35ce524cadbbda875a9c60e9.nii.gz/MD5E-s137578--afcdaaaa35ce524cadbbda875a9c60e9.nii.gz

SWU_4/sub-0025646/ses-1/mri/m0wp1sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/81/Z2/MD5E-s2571095--f51b16a31d63a6ea4fbb012ab677f2b5.nii.gz/MD5E-s2571095--f51b16a31d63a6ea4fbb012ab677f2b5.nii.gz

SWU_4/sub-0025646/ses-1/mri/m0wp2sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q3/mm/MD5E-s2287962--3ce9aec4f9a2d9d2cfc87eede1e6cec3.nii.gz/MD5E-s2287962--3ce9aec4f9a2d9d2cfc87eede1e6cec3.nii.gz

SWU_4/sub-0025646/ses-1/mri/m0wp3sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v6/37/MD5E-s2496166--fe78134959ca9885fb54e004d6514450.nii.gz/MD5E-s2496166--fe78134959ca9885fb54e004d6514450.nii.gz

SWU_4/sub-0025646/ses-1/mri/mori_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025646/ses-1/mri/mori_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/kg/MD5E-s164636--6ecb117fc47711f592348e740c0caac2.nii.gz/MD5E-s164636--6ecb117fc47711f592348e740c0caac2.nii.gz

SWU_4/sub-0025646/ses-1/mri/mwp1sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pf/QM/MD5E-s2578099--d8ac9be74fcb33edb56c7e4350300198.nii.gz/MD5E-s2578099--d8ac9be74fcb33edb56c7e4350300198.nii.gz

SWU_4/sub-0025646/ses-1/mri/mwp2sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8P/g0/MD5E-s2288107--7708e624d48ec3759ee13b88770a45aa.nii.gz/MD5E-s2288107--7708e624d48ec3759ee13b88770a45aa.nii.gz

SWU_4/sub-0025646/ses-1/mri/mwp3sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/Fp/MD5E-s2492372--f9934ee4dae9b8979f9791a0624c5cf8.nii.gz/MD5E-s2492372--f9934ee4dae9b8979f9791a0624c5cf8.nii.gz

SWU_4/sub-0025646/ses-1/mri/neuromorphometrics_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025646/ses-1/mri/neuromorphometrics_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/Qz/MD5E-s189970--f303dbc824e8902651025fea1223175d.nii.gz/MD5E-s189970--f303dbc824e8902651025fea1223175d.nii.gz

SWU_4/sub-0025646/ses-1/mri/p0sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/96/67/MD5E-s586513--114b4886e5e56d4dcf61fe9ee817a9d7.nii.gz/MD5E-s586513--114b4886e5e56d4dcf61fe9ee817a9d7.nii.gz

SWU_4/sub-0025646/ses-1/mri/p1sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gQ/z0/MD5E-s621382--d133b7c89f6eb91d1c1d0c6392a6c8e3.nii.gz/MD5E-s621382--d133b7c89f6eb91d1c1d0c6392a6c8e3.nii.gz

SWU_4/sub-0025646/ses-1/mri/p2sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8X/PF/MD5E-s410672--7400fae000d8445fddfd62265071e379.nii.gz/MD5E-s410672--7400fae000d8445fddfd62265071e379.nii.gz

SWU_4/sub-0025646/ses-1/mri/p3sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/02/MD5E-s350431--58d4f0945c4bfc930f2574773200a6bb.nii.gz/MD5E-s350431--58d4f0945c4bfc930f2574773200a6bb.nii.gz

SWU_4/sub-0025646/ses-1/mri/rp1sub-0025646_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/60/9G/MD5E-s437346--afa33ec573618bf72865bb981fa40cdd.nii.gz/MD5E-s437346--afa33ec573618bf72865bb981fa40cdd.nii.gz

SWU_4/sub-0025646/ses-1/mri/rp2sub-0025646_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/FP/MD5E-s298969--996f3f24e5ff836455811f2be2af05db.nii.gz/MD5E-s298969--996f3f24e5ff836455811f2be2af05db.nii.gz

SWU_4/sub-0025646/ses-1/mri/rp3sub-0025646_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wx/J7/MD5E-s276678--2a9a4af0a825b2cdd1f953a2eda19a79.nii.gz/MD5E-s276678--2a9a4af0a825b2cdd1f953a2eda19a79.nii.gz

SWU_4/sub-0025646/ses-1/mri/t_sub-0025646_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/1g/MD5E-s284--a2f825cf62ae6ebed1d1a4104141fb3a.mat/MD5E-s284--a2f825cf62ae6ebed1d1a4104141fb3a.mat

SWU_4/sub-0025646/ses-1/mri/t_sub-0025646_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J2/4j/MD5E-s282--0a05f14637e0bd53c983a3b5125978d6.mat/MD5E-s282--0a05f14637e0bd53c983a3b5125978d6.mat

SWU_4/sub-0025646/ses-1/mri/thalamus_sub-0025646_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025646/ses-1/mri/thalamus_sub-0025646_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zx/gw/MD5E-s15995--dcbbdea69275aacd640f6b551d72517d.nii.gz/MD5E-s15995--dcbbdea69275aacd640f6b551d72517d.nii.gz

SWU_4/sub-0025646/ses-1/mri/wj_sub-0025646_ses-1_run-1_T1w.nii.gz

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