[DATALAD RUNCMD] Compute BNU_2/sub-0025953/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025953/ses-1/anat/sub-0025953_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025953/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025953/ses-1/label/catROI_sub-0025953_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/gJ/MD5E-s57946--45d71446066b97ec3a776fccc7a24b49.mat/MD5E-s57946--45d71446066b97ec3a776fccc7a24b49.mat

BNU_2/sub-0025953/ses-1/label/catROI_sub-0025953_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GF/Pw/MD5E-s188555--2ac5904e59334b60d05a623e7c0e34d2.xml/MD5E-s188555--2ac5904e59334b60d05a623e7c0e34d2.xml

BNU_2/sub-0025953/ses-1/label/catROIs_sub-0025953_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mQ/0w/MD5E-s120061--47ca961d1799c399a491b2ca6f7c657a.mat/MD5E-s120061--47ca961d1799c399a491b2ca6f7c657a.mat

BNU_2/sub-0025953/ses-1/label/catROIs_sub-0025953_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MW/1v/MD5E-s332096--3c1e8fccf7ef84cc9cd3d3a5a093d96d.xml/MD5E-s332096--3c1e8fccf7ef84cc9cd3d3a5a093d96d.xml

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/Wq/MD5E-s154456--eb69965af74fe509b248e042d1baef21.nii.gz/MD5E-s154456--eb69965af74fe509b248e042d1baef21.nii.gz

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/FG/MD5E-s171702--c901b8e4c07882437ea136b7640bd4f0.nii.gz/MD5E-s171702--c901b8e4c07882437ea136b7640bd4f0.nii.gz

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/21/MD5E-s227510--b8329d79019e9528104bce3e84465fda.nii.gz/MD5E-s227510--b8329d79019e9528104bce3e84465fda.nii.gz

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025953/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kM/7K/MD5E-s252688--3e0cd2102954622648bca98a3ca90d0d.nii.gz/MD5E-s252688--3e0cd2102954622648bca98a3ca90d0d.nii.gz

BNU_2/sub-0025953/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025953/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FW/Qk/MD5E-s19940--7dcbbaae0d5386bddf8561ee85196966.nii.gz/MD5E-s19940--7dcbbaae0d5386bddf8561ee85196966.nii.gz

BNU_2/sub-0025953/ses-1/mri/aal3_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025953/ses-1/mri/aal3_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/QF/MD5E-s170426--068a6ed2fbaee3827a01630d41871bd7.nii.gz/MD5E-s170426--068a6ed2fbaee3827a01630d41871bd7.nii.gz

BNU_2/sub-0025953/ses-1/mri/anatomy3_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025953/ses-1/mri/anatomy3_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/8F/MD5E-s121269--c1b72920103c4f6c14dd289eaea0a581.nii.gz/MD5E-s121269--c1b72920103c4f6c14dd289eaea0a581.nii.gz

BNU_2/sub-0025953/ses-1/mri/anon_misub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6F/Z1/MD5E-s4000388--ee23c089747ef15789ba86c6617639e9.nii.gz/MD5E-s4000388--ee23c089747ef15789ba86c6617639e9.nii.gz

BNU_2/sub-0025953/ses-1/mri/anon_msub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6P/3g/MD5E-s9284674--fb3834c8eefe1fa51252783a7d005feb.nii.gz/MD5E-s9284674--fb3834c8eefe1fa51252783a7d005feb.nii.gz

BNU_2/sub-0025953/ses-1/mri/cat_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wG/5J/MD5E-s91421--adfc1077d1439220edb6cbdd4e32dba2.nii.gz/MD5E-s91421--adfc1077d1439220edb6cbdd4e32dba2.nii.gz

BNU_2/sub-0025953/ses-1/mri/cobra_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025953/ses-1/mri/cobra_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kv/Xv/MD5E-s40409--6ee92538f68b107bd086535cb7a04d2b.nii.gz/MD5E-s40409--6ee92538f68b107bd086535cb7a04d2b.nii.gz

BNU_2/sub-0025953/ses-1/mri/hammers_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025953/ses-1/mri/hammers_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G3/X6/MD5E-s136560--0fb09f7900e2f3a4c89419260e24a36d.nii.gz/MD5E-s136560--0fb09f7900e2f3a4c89419260e24a36d.nii.gz

BNU_2/sub-0025953/ses-1/mri/ibsr_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025953/ses-1/mri/ibsr_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6g/wF/MD5E-s143020--c70025c709655dbb6c95abdd403f2da1.nii.gz/MD5E-s143020--c70025c709655dbb6c95abdd403f2da1.nii.gz

BNU_2/sub-0025953/ses-1/mri/it_sub-0025953_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/k7/MD5E-s284--4095b88e92795f60aba82135d28ea294.mat/MD5E-s284--4095b88e92795f60aba82135d28ea294.mat

BNU_2/sub-0025953/ses-1/mri/it_sub-0025953_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9P/gg/MD5E-s284--bb31a49008bc1ad674bafb8e492f7efa.mat/MD5E-s284--bb31a49008bc1ad674bafb8e492f7efa.mat

BNU_2/sub-0025953/ses-1/mri/iy_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/fk/MD5E-s36847192--3929b257f8ecdfc726533b423a0009dd.nii.gz/MD5E-s36847192--3929b257f8ecdfc726533b423a0009dd.nii.gz

BNU_2/sub-0025953/ses-1/mri/julichbrain_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025953/ses-1/mri/julichbrain_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/Pg/MD5E-s183534--3601271d3f328c0a6bc66e0cab33c551.nii.gz/MD5E-s183534--3601271d3f328c0a6bc66e0cab33c551.nii.gz

BNU_2/sub-0025953/ses-1/mri/lpba40_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025953/ses-1/mri/lpba40_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FM/p7/MD5E-s134266--c05ae5ad32588c6b7fb07c8382404c2d.nii.gz/MD5E-s134266--c05ae5ad32588c6b7fb07c8382404c2d.nii.gz

BNU_2/sub-0025953/ses-1/mri/m0wp1sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/Xf/MD5E-s2573582--d2b72c7354e19c16fa790f09ff8df6d6.nii.gz/MD5E-s2573582--d2b72c7354e19c16fa790f09ff8df6d6.nii.gz

BNU_2/sub-0025953/ses-1/mri/m0wp2sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/88/MD5E-s2277308--0dbe3ab27347ce856a4e736d6e9c95f4.nii.gz/MD5E-s2277308--0dbe3ab27347ce856a4e736d6e9c95f4.nii.gz

BNU_2/sub-0025953/ses-1/mri/m0wp3sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/0x/MD5E-s2446352--66af047b9bc1b71e73bf01474046c713.nii.gz/MD5E-s2446352--66af047b9bc1b71e73bf01474046c713.nii.gz

BNU_2/sub-0025953/ses-1/mri/mori_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025953/ses-1/mri/mori_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z3/qw/MD5E-s157217--9ae16861c548666ff82a3f5c7b9e75dd.nii.gz/MD5E-s157217--9ae16861c548666ff82a3f5c7b9e75dd.nii.gz

BNU_2/sub-0025953/ses-1/mri/mwp1sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G8/6w/MD5E-s2573224--92cc029d86a82464a26b84e8b26257d9.nii.gz/MD5E-s2573224--92cc029d86a82464a26b84e8b26257d9.nii.gz

BNU_2/sub-0025953/ses-1/mri/mwp2sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X8/XV/MD5E-s2272582--63782594eaaa87d97c74ad49f50681e1.nii.gz/MD5E-s2272582--63782594eaaa87d97c74ad49f50681e1.nii.gz

BNU_2/sub-0025953/ses-1/mri/mwp3sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/97/MD5E-s2442893--597ed80cc57a8e42cf6737b68a33470f.nii.gz/MD5E-s2442893--597ed80cc57a8e42cf6737b68a33470f.nii.gz

BNU_2/sub-0025953/ses-1/mri/neuromorphometrics_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025953/ses-1/mri/neuromorphometrics_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kw/G4/MD5E-s187358--08ef91678fe084a2ee21cc8c98a8906f.nii.gz/MD5E-s187358--08ef91678fe084a2ee21cc8c98a8906f.nii.gz

BNU_2/sub-0025953/ses-1/mri/p0sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6J/0m/MD5E-s772184--05e7ea45456697dc56285aec1778cc5e.nii.gz/MD5E-s772184--05e7ea45456697dc56285aec1778cc5e.nii.gz

BNU_2/sub-0025953/ses-1/mri/p1sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zz/mz/MD5E-s789666--734253b5383b6546ea477a9a2295dedf.nii.gz/MD5E-s789666--734253b5383b6546ea477a9a2295dedf.nii.gz

BNU_2/sub-0025953/ses-1/mri/p2sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/mk/MD5E-s536515--13678046151ebd06f64b53c59db88693.nii.gz/MD5E-s536515--13678046151ebd06f64b53c59db88693.nii.gz

BNU_2/sub-0025953/ses-1/mri/p3sub-0025953_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/Kz/v2/MD5E-s481588--dd370af5e17e7e91eeb517e4aca9dabb.nii.gz/MD5E-s481588--dd370af5e17e7e91eeb517e4aca9dabb.nii.gz

BNU_2/sub-0025953/ses-1/mri/rp1sub-0025953_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/z1/MD5E-s438254--ac70dcabe3fe394bf82c3158f9c97c8a.nii.gz/MD5E-s438254--ac70dcabe3fe394bf82c3158f9c97c8a.nii.gz

BNU_2/sub-0025953/ses-1/mri/rp2sub-0025953_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025953/ses-1/mri/rp3sub-0025953_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025953/ses-1/mri/t_sub-0025953_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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BNU_2/sub-0025953/ses-1/mri/t_sub-0025953_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/Qx/MD5E-s285--febeb3af2a637095f038eac755c118df.mat/MD5E-s285--febeb3af2a637095f038eac755c118df.mat

BNU_2/sub-0025953/ses-1/mri/thalamus_sub-0025953_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_2/sub-0025953/ses-1/mri/thalamus_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/Wp/MD5E-s12697--81fb381a3c7f93f020749fd09f25ba6a.nii.gz/MD5E-s12697--81fb381a3c7f93f020749fd09f25ba6a.nii.gz

BNU_2/sub-0025953/ses-1/mri/wj_sub-0025953_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025953/ses-1/mri/wmisub-0025953_ses-1_run-1_T1w.nii.gz

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