[DATALAD RUNCMD] Compute SWU_4/sub-0025784/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025784/ses-1/anat/sub-0025784_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025784/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025784/ses-1/label/catROI_sub-0025784_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vf/3m/MD5E-s61255--b30aad15d54a7a3c6a1fd892ed2bba7e.mat/MD5E-s61255--b30aad15d54a7a3c6a1fd892ed2bba7e.mat

SWU_4/sub-0025784/ses-1/label/catROI_sub-0025784_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/42/MD5E-s189024--af35dd5d3a7a53cbb6ebcb1b0b6c0d4e.xml/MD5E-s189024--af35dd5d3a7a53cbb6ebcb1b0b6c0d4e.xml

SWU_4/sub-0025784/ses-1/label/catROIs_sub-0025784_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3k/6f/MD5E-s120148--69d9a8d4963933efceea69ec190c2535.mat/MD5E-s120148--69d9a8d4963933efceea69ec190c2535.mat

SWU_4/sub-0025784/ses-1/label/catROIs_sub-0025784_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/49/g6/MD5E-s332120--4f7d16f81fcd57447c939bfc2f1fd3f5.xml/MD5E-s332120--4f7d16f81fcd57447c939bfc2f1fd3f5.xml

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7X/0v/MD5E-s161282--9df58f9ada850dd496b400b3f4f13df6.nii.gz/MD5E-s161282--9df58f9ada850dd496b400b3f4f13df6.nii.gz

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZX/1M/MD5E-s180204--955d3432caf1357233f0d429a6282566.nii.gz/MD5E-s180204--955d3432caf1357233f0d429a6282566.nii.gz

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G9/3m/MD5E-s244043--330a78ee2a9a0ecfe7c27b40dc2c73cb.nii.gz/MD5E-s244043--330a78ee2a9a0ecfe7c27b40dc2c73cb.nii.gz

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025784/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/K8/MD5E-s270852--b8e4af7144969449e22d5f1f374bf3bd.nii.gz/MD5E-s270852--b8e4af7144969449e22d5f1f374bf3bd.nii.gz

SWU_4/sub-0025784/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025784/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/5q/MD5E-s26031--d5f76287fbcadc77687f979aa0bb3fff.nii.gz/MD5E-s26031--d5f76287fbcadc77687f979aa0bb3fff.nii.gz

SWU_4/sub-0025784/ses-1/mri/aal3_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025784/ses-1/mri/aal3_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/04/MD5E-s184458--45fd010dbc9655e3fc68720f09459653.nii.gz/MD5E-s184458--45fd010dbc9655e3fc68720f09459653.nii.gz

SWU_4/sub-0025784/ses-1/mri/anatomy3_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025784/ses-1/mri/anatomy3_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9V/7J/MD5E-s130697--c2e56932f7096258a2c8d3bf6a247fae.nii.gz/MD5E-s130697--c2e56932f7096258a2c8d3bf6a247fae.nii.gz

SWU_4/sub-0025784/ses-1/mri/anon_misub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xQ/G8/MD5E-s9265983--9f3dc7dd3d468a12169fbfed3e7615bc.nii.gz/MD5E-s9265983--9f3dc7dd3d468a12169fbfed3e7615bc.nii.gz

SWU_4/sub-0025784/ses-1/mri/anon_msub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/v0/MD5E-s10658968--7b8b24c5af0a6ff05650feeeba6c92df.nii.gz/MD5E-s10658968--7b8b24c5af0a6ff05650feeeba6c92df.nii.gz

SWU_4/sub-0025784/ses-1/mri/cat_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vk/fF/MD5E-s101185--fa6e3a9ddbcc137faca99443c1247082.nii.gz/MD5E-s101185--fa6e3a9ddbcc137faca99443c1247082.nii.gz

SWU_4/sub-0025784/ses-1/mri/cobra_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025784/ses-1/mri/cobra_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/v7/MD5E-s50094--896c6de17ef7f0ff0d14c33cb429be94.nii.gz/MD5E-s50094--896c6de17ef7f0ff0d14c33cb429be94.nii.gz

SWU_4/sub-0025784/ses-1/mri/hammers_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025784/ses-1/mri/hammers_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1Q/fG/MD5E-s147583--28dd619b327de78eedfe9143a34f17bf.nii.gz/MD5E-s147583--28dd619b327de78eedfe9143a34f17bf.nii.gz

SWU_4/sub-0025784/ses-1/mri/ibsr_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025784/ses-1/mri/ibsr_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wg/Z6/MD5E-s153904--4156bb9681b2358c24403768f374b48e.nii.gz/MD5E-s153904--4156bb9681b2358c24403768f374b48e.nii.gz

SWU_4/sub-0025784/ses-1/mri/it_sub-0025784_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j5/22/MD5E-s282--11eef92e17e3295ad53f3145350ecd20.mat/MD5E-s282--11eef92e17e3295ad53f3145350ecd20.mat

SWU_4/sub-0025784/ses-1/mri/it_sub-0025784_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/46/wZ/MD5E-s283--981685c523437412b93899d3bde8a545.mat/MD5E-s283--981685c523437412b93899d3bde8a545.mat

SWU_4/sub-0025784/ses-1/mri/iy_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z2/v0/MD5E-s45698035--ae42382a0e43c7cbd0817c8af5a73681.nii.gz/MD5E-s45698035--ae42382a0e43c7cbd0817c8af5a73681.nii.gz

SWU_4/sub-0025784/ses-1/mri/julichbrain_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025784/ses-1/mri/julichbrain_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/Q3/MD5E-s193058--1084af35d2f6c8db304da87cb137a441.nii.gz/MD5E-s193058--1084af35d2f6c8db304da87cb137a441.nii.gz

SWU_4/sub-0025784/ses-1/mri/lpba40_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025784/ses-1/mri/lpba40_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8w/FF/MD5E-s142609--c2fbf95ed86565295e56ebb9d92e839d.nii.gz/MD5E-s142609--c2fbf95ed86565295e56ebb9d92e839d.nii.gz

SWU_4/sub-0025784/ses-1/mri/m0wp1sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QF/xm/MD5E-s2574338--91c0b8c98ce93ee56301cc4878da036f.nii.gz/MD5E-s2574338--91c0b8c98ce93ee56301cc4878da036f.nii.gz

SWU_4/sub-0025784/ses-1/mri/m0wp2sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0x/fF/MD5E-s2317182--f2467bb5e328c591a3c09b4bf0fea23b.nii.gz/MD5E-s2317182--f2467bb5e328c591a3c09b4bf0fea23b.nii.gz

SWU_4/sub-0025784/ses-1/mri/m0wp3sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7F/MZ/MD5E-s2549010--60675a2001bdc7caec480897fdec72ce.nii.gz/MD5E-s2549010--60675a2001bdc7caec480897fdec72ce.nii.gz

SWU_4/sub-0025784/ses-1/mri/mori_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025784/ses-1/mri/mori_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0f/j0/MD5E-s173621--af6530f4b32be02eddd565afc88e0339.nii.gz/MD5E-s173621--af6530f4b32be02eddd565afc88e0339.nii.gz

SWU_4/sub-0025784/ses-1/mri/mwp1sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kX/x8/MD5E-s2582369--2a8f10302f1daf848926cc4174ee71eb.nii.gz/MD5E-s2582369--2a8f10302f1daf848926cc4174ee71eb.nii.gz

SWU_4/sub-0025784/ses-1/mri/mwp2sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025784/ses-1/mri/mwp3sub-0025784_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025784/ses-1/mri/neuromorphometrics_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025784/ses-1/mri/neuromorphometrics_sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025784/ses-1/mri/p0sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F4/m0/MD5E-s620296--c6fb8a8685dcc25611abe931df68a3c4.nii.gz/MD5E-s620296--c6fb8a8685dcc25611abe931df68a3c4.nii.gz

SWU_4/sub-0025784/ses-1/mri/p1sub-0025784_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/4Q/MD5E-s657282--434b8ae4974e000cc13e203dc2a0902c.nii.gz/MD5E-s657282--434b8ae4974e000cc13e203dc2a0902c.nii.gz

SWU_4/sub-0025784/ses-1/mri/p2sub-0025784_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025784/ses-1/mri/p3sub-0025784_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025784/ses-1/mri/rp1sub-0025784_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025784/ses-1/mri/rp2sub-0025784_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025784/ses-1/mri/rp3sub-0025784_ses-1_run-1_T1w_affine.nii.gz

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SWU_4/sub-0025784/ses-1/mri/t_sub-0025784_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/fk/MD5E-s285--083bc037e51034317797cd4057697fb7.mat/MD5E-s285--083bc037e51034317797cd4057697fb7.mat

SWU_4/sub-0025784/ses-1/mri/t_sub-0025784_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025784/ses-1/mri/thalamus_sub-0025784_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025784/ses-1/mri/thalamus_sub-0025784_ses-1_run-1_T1w.nii.gz

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