[DATALAD RUNCMD] Compute SWU_1/sub-0027210/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027210/ses-2/anat/sub-0027210_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027210/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027210/ses-2/label/catROI_sub-0027210_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/9x/MD5E-s58535--0123b055ac8858ea4994c07acc6540af.mat/MD5E-s58535--0123b055ac8858ea4994c07acc6540af.mat

SWU_1/sub-0027210/ses-2/label/catROI_sub-0027210_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WW/PM/MD5E-s188797--98046fdf9f4f404001f18b6e166dc843.xml/MD5E-s188797--98046fdf9f4f404001f18b6e166dc843.xml

SWU_1/sub-0027210/ses-2/label/catROI_sub-0027210_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x7/36/MD5E-s61171--40caf59e6638af27e32a87b789a7ce41.mat/MD5E-s61171--40caf59e6638af27e32a87b789a7ce41.mat

SWU_1/sub-0027210/ses-2/label/catROI_sub-0027210_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f2/9Z/MD5E-s188717--56c467348138812de557585707735f04.xml/MD5E-s188717--56c467348138812de557585707735f04.xml

SWU_1/sub-0027210/ses-2/label/catROIs_sub-0027210_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/Zq/MD5E-s119907--135a35ebf7aacc5e4c50426c307b42b6.mat/MD5E-s119907--135a35ebf7aacc5e4c50426c307b42b6.mat

SWU_1/sub-0027210/ses-2/label/catROIs_sub-0027210_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Px/vP/MD5E-s332130--4e717f4be4ecbb532e05891b88a03876.xml/MD5E-s332130--4e717f4be4ecbb532e05891b88a03876.xml

SWU_1/sub-0027210/ses-2/label/catROIs_sub-0027210_ses-2_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kw/zW/MD5E-s119901--0d36f196785f6dd1f3f985a1efac0219.mat/MD5E-s119901--0d36f196785f6dd1f3f985a1efac0219.mat

SWU_1/sub-0027210/ses-2/label/catROIs_sub-0027210_ses-2_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5j/mW/MD5E-s332108--10e810dac08f1b3bb84c135d3e601f22.xml/MD5E-s332108--10e810dac08f1b3bb84c135d3e601f22.xml

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qp/pJ/MD5E-s171490--96bceb5a6830dacdc92ef75f3f57c9f5.nii.gz/MD5E-s171490--96bceb5a6830dacdc92ef75f3f57c9f5.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/qp/67/MD5E-s171795--1dd1e7bd2065fd0ddfe5d158c93ff1d0.nii.gz/MD5E-s171795--1dd1e7bd2065fd0ddfe5d158c93ff1d0.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/kv/MD5E-s190949--1a11b8afc24644cff90415b5427faa77.nii.gz/MD5E-s190949--1a11b8afc24644cff90415b5427faa77.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/P8/PQ/MD5E-s190967--d849576b3df822a9a5f01941abb41f36.nii.gz/MD5E-s190967--d849576b3df822a9a5f01941abb41f36.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gq/83/MD5E-s258185--48efe23cbb650ec7a5d61378bf9b3b0e.nii.gz/MD5E-s258185--48efe23cbb650ec7a5d61378bf9b3b0e.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Qq/qv/MD5E-s257664--e26f8ee6a41cd09389b22a3479dbc366.nii.gz/MD5E-s257664--e26f8ee6a41cd09389b22a3479dbc366.nii.gz

SWU_1/sub-0027210/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zp/3p/MD5E-s285200--90cf6661d80f764b766a0f266cdce65f.nii.gz/MD5E-s285200--90cf6661d80f764b766a0f266cdce65f.nii.gz

SWU_1/sub-0027210/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q9/p8/MD5E-s25176--c46e3faecf2dc42288d7b8a2e6461081.nii.gz/MD5E-s25176--c46e3faecf2dc42288d7b8a2e6461081.nii.gz

SWU_1/sub-0027210/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x6/MQ/MD5E-s24482--2fcf55bd3c461193583d72111f9526c7.nii.gz/MD5E-s24482--2fcf55bd3c461193583d72111f9526c7.nii.gz

SWU_1/sub-0027210/ses-2/mri/aal3_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q5/jG/MD5E-s191585--400559ae6c62c123526db683cf24ace9.nii.gz/MD5E-s191585--400559ae6c62c123526db683cf24ace9.nii.gz

SWU_1/sub-0027210/ses-2/mri/aal3_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J2/07/MD5E-s190614--b1bd9bb57b51f5672428fde08deedfe8.nii.gz/MD5E-s190614--b1bd9bb57b51f5672428fde08deedfe8.nii.gz

SWU_1/sub-0027210/ses-2/mri/anatomy3_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0P/F5/MD5E-s140299--d00fa691458a8c696f6bfc511d7112c4.nii.gz/MD5E-s140299--d00fa691458a8c696f6bfc511d7112c4.nii.gz

SWU_1/sub-0027210/ses-2/mri/anatomy3_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/4P/MK/MD5E-s139486--1069633ff00f9288c4dd9ceb287f5fe5.nii.gz/MD5E-s139486--1069633ff00f9288c4dd9ceb287f5fe5.nii.gz

SWU_1/sub-0027210/ses-2/mri/anon_misub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/anon_misub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kQ/g1/MD5E-s9344697--9fbb05919579531a1ec90194213dd330.nii.gz/MD5E-s9344697--9fbb05919579531a1ec90194213dd330.nii.gz

SWU_1/sub-0027210/ses-2/mri/anon_msub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/anon_msub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027210/ses-2/mri/cat_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/j6/MD5E-s105164--282886e5818a56f85297f67f468cb7be.nii.gz/MD5E-s105164--282886e5818a56f85297f67f468cb7be.nii.gz

SWU_1/sub-0027210/ses-2/mri/cat_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gz/j7/MD5E-s103047--7c9cf51476b11243092a1b6836a253f7.nii.gz/MD5E-s103047--7c9cf51476b11243092a1b6836a253f7.nii.gz

SWU_1/sub-0027210/ses-2/mri/cobra_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027210/ses-2/mri/cobra_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027210/ses-2/mri/hammers_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027210/ses-2/mri/hammers_sub-0027210_ses-2_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027210/ses-2/mri/ibsr_sub-0027210_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027210/ses-2/mri/ibsr_sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/it_sub-0027210_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0z/K2/MD5E-s284--a9684e70aefcde5e57ac86e5fafe29a6.mat/MD5E-s284--a9684e70aefcde5e57ac86e5fafe29a6.mat

SWU_1/sub-0027210/ses-2/mri/it_sub-0027210_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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SWU_1/sub-0027210/ses-2/mri/it_sub-0027210_ses-2_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027210/ses-2/mri/it_sub-0027210_ses-2_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027210/ses-2/mri/iy_sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/iy_sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/julichbrain_sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/julichbrain_sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/lpba40_sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/lpba40_sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp1sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp1sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp2sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp2sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp3sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/m0wp3sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/mori_sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/mori_sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/mwp1sub-0027210_ses-2_run-1_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/mwp1sub-0027210_ses-2_run-2_T1w.nii.gz

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SWU_1/sub-0027210/ses-2/mri/mwp2sub-0027210_ses-2_run-1_T1w.nii.gz

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