[DATALAD RUNCMD] Compute BMB_1/sub-0003042/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003042/ses-1/anat/sub-0003042_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003042/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003042/ses-1/label/catROI_sub-0003042_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xm/qp/MD5E-s58138--1a839e3bca6d478ad66be2b9f1affa0f.mat/MD5E-s58138--1a839e3bca6d478ad66be2b9f1affa0f.mat

BMB_1/sub-0003042/ses-1/label/catROI_sub-0003042_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0G/4Q/MD5E-s188892--9b145297fae78253068684630b27debc.xml/MD5E-s188892--9b145297fae78253068684630b27debc.xml

BMB_1/sub-0003042/ses-1/label/catROIs_sub-0003042_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zF/QJ/MD5E-s119916--05fcd7c3f0d07a346779e564cb21cb8e.mat/MD5E-s119916--05fcd7c3f0d07a346779e564cb21cb8e.mat

BMB_1/sub-0003042/ses-1/label/catROIs_sub-0003042_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6G/k6/MD5E-s332087--d3c410bfae601a5356d90cf230e30fb7.xml/MD5E-s332087--d3c410bfae601a5356d90cf230e30fb7.xml

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kx/xf/MD5E-s177331--ea772c226696a6c9a1f38ef01fda1c8f.nii.gz/MD5E-s177331--ea772c226696a6c9a1f38ef01fda1c8f.nii.gz

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/52/MD5E-s198687--351c0fa610dc18e292d6ca7fdd60f7d7.nii.gz/MD5E-s198687--351c0fa610dc18e292d6ca7fdd60f7d7.nii.gz

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/wX/MD5E-s267582--9770d411f7ae97362660004663d516fb.nii.gz/MD5E-s267582--9770d411f7ae97362660004663d516fb.nii.gz

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003042/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jf/4f/MD5E-s298465--1cd9ad3d682178a279756e79ab26e50f.nii.gz/MD5E-s298465--1cd9ad3d682178a279756e79ab26e50f.nii.gz

BMB_1/sub-0003042/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003042/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/gJ/MD5E-s25477--86e8d498b4a5493ef9d030231823dcb9.nii.gz/MD5E-s25477--86e8d498b4a5493ef9d030231823dcb9.nii.gz

BMB_1/sub-0003042/ses-1/mri/aal3_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003042/ses-1/mri/aal3_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/g0/MD5E-s201013--2489a4fb76d643e774147781e850f8da.nii.gz/MD5E-s201013--2489a4fb76d643e774147781e850f8da.nii.gz

BMB_1/sub-0003042/ses-1/mri/anatomy3_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003042/ses-1/mri/anatomy3_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fm/w3/MD5E-s147097--e2b09d4f8e5442da519c25c0596ffca5.nii.gz/MD5E-s147097--e2b09d4f8e5442da519c25c0596ffca5.nii.gz

BMB_1/sub-0003042/ses-1/mri/anon_misub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qG/xJ/MD5E-s6870305--3914007cb65dc8fa40c1e63864b09029.nii.gz/MD5E-s6870305--3914007cb65dc8fa40c1e63864b09029.nii.gz

BMB_1/sub-0003042/ses-1/mri/anon_msub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/2p/MD5E-s14089097--cb0241f81cf3a175b246b716419f382a.nii.gz/MD5E-s14089097--cb0241f81cf3a175b246b716419f382a.nii.gz

BMB_1/sub-0003042/ses-1/mri/cat_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fz/3j/MD5E-s111051--abec6663317b14a2a5a8afea598f5b79.nii.gz/MD5E-s111051--abec6663317b14a2a5a8afea598f5b79.nii.gz

BMB_1/sub-0003042/ses-1/mri/cobra_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003042/ses-1/mri/cobra_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mz/4K/MD5E-s51489--b711d70566eaaadcff767f43b6d7837e.nii.gz/MD5E-s51489--b711d70566eaaadcff767f43b6d7837e.nii.gz

BMB_1/sub-0003042/ses-1/mri/hammers_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003042/ses-1/mri/hammers_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3K/2x/MD5E-s161071--8e6166f1c6df6550fbe056c2cbbe1047.nii.gz/MD5E-s161071--8e6166f1c6df6550fbe056c2cbbe1047.nii.gz

BMB_1/sub-0003042/ses-1/mri/ibsr_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003042/ses-1/mri/ibsr_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JK/z9/MD5E-s168921--74150731682d49250884d4fe96cb7fa2.nii.gz/MD5E-s168921--74150731682d49250884d4fe96cb7fa2.nii.gz

BMB_1/sub-0003042/ses-1/mri/it_sub-0003042_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wm/48/MD5E-s283--92fb5ce35f39af04441689a7e5f5aafb.mat/MD5E-s283--92fb5ce35f39af04441689a7e5f5aafb.mat

BMB_1/sub-0003042/ses-1/mri/it_sub-0003042_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kf/kZ/MD5E-s282--660fd01245d12e85281f1d3d7205168d.mat/MD5E-s282--660fd01245d12e85281f1d3d7205168d.mat

BMB_1/sub-0003042/ses-1/mri/iy_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xK/2J/MD5E-s51756471--00d6759ffe8bfb089b133a4fddd58b42.nii.gz/MD5E-s51756471--00d6759ffe8bfb089b133a4fddd58b42.nii.gz

BMB_1/sub-0003042/ses-1/mri/julichbrain_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003042/ses-1/mri/julichbrain_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/33/10/MD5E-s215057--58d490751d4303c4242fa4fa022126d1.nii.gz/MD5E-s215057--58d490751d4303c4242fa4fa022126d1.nii.gz

BMB_1/sub-0003042/ses-1/mri/lpba40_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003042/ses-1/mri/lpba40_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vM/qV/MD5E-s155539--2fa5bb25585cef3a43f89a8f97b06310.nii.gz/MD5E-s155539--2fa5bb25585cef3a43f89a8f97b06310.nii.gz

BMB_1/sub-0003042/ses-1/mri/m0wp1sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/22/MD5E-s2566040--9429c64eaa248279f77753122a47cf24.nii.gz/MD5E-s2566040--9429c64eaa248279f77753122a47cf24.nii.gz

BMB_1/sub-0003042/ses-1/mri/m0wp2sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4q/2W/MD5E-s2311538--0d573d7444e1555bb900e17513ba4dd1.nii.gz/MD5E-s2311538--0d573d7444e1555bb900e17513ba4dd1.nii.gz

BMB_1/sub-0003042/ses-1/mri/m0wp3sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/kF/MD5E-s2556478--42c5f8b5ce5798acd056dd70235f4426.nii.gz/MD5E-s2556478--42c5f8b5ce5798acd056dd70235f4426.nii.gz

BMB_1/sub-0003042/ses-1/mri/mori_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003042/ses-1/mri/mori_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2W/94/MD5E-s186873--bcddeb8d1dac2a8724417a4096bd33e8.nii.gz/MD5E-s186873--bcddeb8d1dac2a8724417a4096bd33e8.nii.gz

BMB_1/sub-0003042/ses-1/mri/mwp1sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6w/9G/MD5E-s2565595--16df95700aa7f4a8ee6a64c548a91967.nii.gz/MD5E-s2565595--16df95700aa7f4a8ee6a64c548a91967.nii.gz

BMB_1/sub-0003042/ses-1/mri/mwp2sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/Xm/MD5E-s2308687--78860a59159fea4674931945eff134f2.nii.gz/MD5E-s2308687--78860a59159fea4674931945eff134f2.nii.gz

BMB_1/sub-0003042/ses-1/mri/mwp3sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Q/vj/MD5E-s2553033--d31bf0192bc2134a3635f4262cdd43de.nii.gz/MD5E-s2553033--d31bf0192bc2134a3635f4262cdd43de.nii.gz

BMB_1/sub-0003042/ses-1/mri/neuromorphometrics_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003042/ses-1/mri/neuromorphometrics_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p7/f1/MD5E-s216985--d53f6891bd34e46a54b20931d2de7e09.nii.gz/MD5E-s216985--d53f6891bd34e46a54b20931d2de7e09.nii.gz

BMB_1/sub-0003042/ses-1/mri/p0sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/96/MD5E-s700229--549012fef619dde0b2e242caa4ebe304.nii.gz/MD5E-s700229--549012fef619dde0b2e242caa4ebe304.nii.gz

BMB_1/sub-0003042/ses-1/mri/p1sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/F8/MD5E-s732006--516ce059b3157260479bd4d6a5c6e9d9.nii.gz/MD5E-s732006--516ce059b3157260479bd4d6a5c6e9d9.nii.gz

BMB_1/sub-0003042/ses-1/mri/p2sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g6/5g/MD5E-s475244--7c247f3a7f8dbb33633bc6f013a0aa6c.nii.gz/MD5E-s475244--7c247f3a7f8dbb33633bc6f013a0aa6c.nii.gz

BMB_1/sub-0003042/ses-1/mri/p3sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fp/z0/MD5E-s449480--559bb0da7da821dd222212a2af145895.nii.gz/MD5E-s449480--559bb0da7da821dd222212a2af145895.nii.gz

BMB_1/sub-0003042/ses-1/mri/rp1sub-0003042_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7p/5V/MD5E-s434892--348a954ab47c0849f4aa5ac532d2aa20.nii.gz/MD5E-s434892--348a954ab47c0849f4aa5ac532d2aa20.nii.gz

BMB_1/sub-0003042/ses-1/mri/rp2sub-0003042_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/pz/MD5E-s297707--9165dcf2e0e1239e31223c49ecc1d04b.nii.gz/MD5E-s297707--9165dcf2e0e1239e31223c49ecc1d04b.nii.gz

BMB_1/sub-0003042/ses-1/mri/rp3sub-0003042_ses-1_run-1_T1w_affine.nii.gz

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BMB_1/sub-0003042/ses-1/mri/t_sub-0003042_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2G/Wq/MD5E-s283--ed9600cc8e9bf78bebd2888037ebca6f.mat/MD5E-s283--ed9600cc8e9bf78bebd2888037ebca6f.mat

BMB_1/sub-0003042/ses-1/mri/t_sub-0003042_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/83/Wx/MD5E-s283--b946ece2cda64194316610f84cca54bc.mat/MD5E-s283--b946ece2cda64194316610f84cca54bc.mat

BMB_1/sub-0003042/ses-1/mri/thalamus_sub-0003042_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003042/ses-1/mri/thalamus_sub-0003042_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q7/km/MD5E-s16627--91492be7c62222bdd23cceea5298ff49.nii.gz/MD5E-s16627--91492be7c62222bdd23cceea5298ff49.nii.gz

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