[DATALAD RUNCMD] Compute MRN/sub-0027018/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027018/ses-2/anat/sub-0027018_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027018/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027018/ses-2/label/catROI_sub-0027018_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/q4/MD5E-s61261--3d756ff3813bd8f97f7cc54de45fafd5.mat/MD5E-s61261--3d756ff3813bd8f97f7cc54de45fafd5.mat

MRN/sub-0027018/ses-2/label/catROI_sub-0027018_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FZ/gQ/MD5E-s188816--6bdc0759ede35d5c9b3502e73298af51.xml/MD5E-s188816--6bdc0759ede35d5c9b3502e73298af51.xml

MRN/sub-0027018/ses-2/label/catROIs_sub-0027018_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/MX/MD5E-s120033--19c9e685bb97edc2f072fac0bb9fb78a.mat/MD5E-s120033--19c9e685bb97edc2f072fac0bb9fb78a.mat

MRN/sub-0027018/ses-2/label/catROIs_sub-0027018_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/1V/MD5E-s332100--485806b49c17ef2b7d0f875a8d640e50.xml/MD5E-s332100--485806b49c17ef2b7d0f875a8d640e50.xml

MRN/sub-0027018/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027018/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/9q/MD5E-s175730--7e060f3d6f4c57b3ce8c0729c4b3d4de.nii.gz/MD5E-s175730--7e060f3d6f4c57b3ce8c0729c4b3d4de.nii.gz

MRN/sub-0027018/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027018/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/77/MD5E-s196066--e861ad4114c5b067a205338cf9174eab.nii.gz/MD5E-s196066--e861ad4114c5b067a205338cf9174eab.nii.gz

MRN/sub-0027018/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027018/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/6w/MD5E-s262460--060cbfda5cbc2a3c31b3e74b4236c0ef.nii.gz/MD5E-s262460--060cbfda5cbc2a3c31b3e74b4236c0ef.nii.gz

MRN/sub-0027018/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027018/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pj/QP/MD5E-s291332--f014e925efc98ef47b9d984d3e589314.nii.gz/MD5E-s291332--f014e925efc98ef47b9d984d3e589314.nii.gz

MRN/sub-0027018/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/Tian_Subcortex_S2_7T_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/aal3_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/aal3_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/anatomy3_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/anatomy3_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/anon_misub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GZ/pJ/MD5E-s9322582--107dbc011f0b94d760d223429673f642.nii.gz/MD5E-s9322582--107dbc011f0b94d760d223429673f642.nii.gz

MRN/sub-0027018/ses-2/mri/anon_msub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/cat_sub-0027018_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027018/ses-2/mri/cobra_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027018/ses-2/mri/cobra_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/hammers_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/hammers_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/ibsr_sub-0027018_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027018/ses-2/mri/ibsr_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/it_sub-0027018_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fK/Vz/MD5E-s284--50f892d13497a431969896a0f1d313ef.mat/MD5E-s284--50f892d13497a431969896a0f1d313ef.mat

MRN/sub-0027018/ses-2/mri/it_sub-0027018_ses-2_run-1_T1w_rigid_reorient.mat

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+../../../../.git/annex/objects/0Z/xk/MD5E-s283--3fd4ab39ca6eaf6f7caaf6a17e4547c2.mat/MD5E-s283--3fd4ab39ca6eaf6f7caaf6a17e4547c2.mat

MRN/sub-0027018/ses-2/mri/iy_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/julichbrain_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/julichbrain_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/lpba40_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/lpba40_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/m0wp1sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/m0wp2sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/m0wp3sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/mori_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/mori_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/mwp1sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/mwp2sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/mwp3sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/neuromorphometrics_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/neuromorphometrics_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/p0sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/p1sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/p2sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/p3sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/rp1sub-0027018_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027018/ses-2/mri/rp2sub-0027018_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027018/ses-2/mri/rp3sub-0027018_ses-2_run-1_T1w_affine.nii.gz

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MRN/sub-0027018/ses-2/mri/t_sub-0027018_ses-2_run-1_T1w_affine_reorient.mat

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MRN/sub-0027018/ses-2/mri/t_sub-0027018_ses-2_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027018/ses-2/mri/thalamus_sub-0027018_ses-2_run-1_T1w.csv

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MRN/sub-0027018/ses-2/mri/thalamus_sub-0027018_ses-2_run-1_T1w.nii.gz

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MRN/sub-0027018/ses-2/mri/wj_sub-0027018_ses-2_run-1_T1w.nii.gz

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