[DATALAD RUNCMD] Compute SWU_1/sub-0027220/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_1/sub-0027220/ses-1/anat/sub-0027220_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_1/sub-0027220/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_1/sub-0027220/ses-1/label/catROI_sub-0027220_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k7/z3/MD5E-s58676--c2e1fc5f9cb49c7cbafac5e5c2d380f1.mat/MD5E-s58676--c2e1fc5f9cb49c7cbafac5e5c2d380f1.mat

SWU_1/sub-0027220/ses-1/label/catROI_sub-0027220_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/3x/MD5E-s188889--7df7353568b0c6884909c503e03e8036.xml/MD5E-s188889--7df7353568b0c6884909c503e03e8036.xml

SWU_1/sub-0027220/ses-1/label/catROI_sub-0027220_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/KJ/3p/MD5E-s61298--76ee3fea3568557dc7574385fa48bc94.mat/MD5E-s61298--76ee3fea3568557dc7574385fa48bc94.mat

SWU_1/sub-0027220/ses-1/label/catROI_sub-0027220_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/g1/02/MD5E-s188984--bfcf7b9d84832cc1f78503e25ca5ce87.xml/MD5E-s188984--bfcf7b9d84832cc1f78503e25ca5ce87.xml

SWU_1/sub-0027220/ses-1/label/catROIs_sub-0027220_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xp/mm/MD5E-s120007--cb4ff6f062e6ef2a147c28c71d96a870.mat/MD5E-s120007--cb4ff6f062e6ef2a147c28c71d96a870.mat

SWU_1/sub-0027220/ses-1/label/catROIs_sub-0027220_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/Z6/MD5E-s332090--d3fee3f96e5c1b695e434cc2a2de622f.xml/MD5E-s332090--d3fee3f96e5c1b695e434cc2a2de622f.xml

SWU_1/sub-0027220/ses-1/label/catROIs_sub-0027220_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W6/V2/MD5E-s120040--9e2fe21e155c6e8e7e4e5b238e65a45c.mat/MD5E-s120040--9e2fe21e155c6e8e7e4e5b238e65a45c.mat

SWU_1/sub-0027220/ses-1/label/catROIs_sub-0027220_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vp/Jz/MD5E-s332144--eefd6cbeefd4ea484d507106bbc0c10d.xml/MD5E-s332144--eefd6cbeefd4ea484d507106bbc0c10d.xml

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/78/pm/MD5E-s172783--d6bcd4fa1bb5ce1fa036ea90b25741a6.nii.gz/MD5E-s172783--d6bcd4fa1bb5ce1fa036ea90b25741a6.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/ZK/XM/MD5E-s173120--705865ef3458a28d66cbec07d1003972.nii.gz/MD5E-s173120--705865ef3458a28d66cbec07d1003972.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jz/6J/MD5E-s192341--e9704fbf4136cb951476a342af21cedf.nii.gz/MD5E-s192341--e9704fbf4136cb951476a342af21cedf.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X8/93/MD5E-s192813--2597cecb417985d8ae285d7bd3cdad09.nii.gz/MD5E-s192813--2597cecb417985d8ae285d7bd3cdad09.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/Fz/MD5E-s259089--76cfba7c9fbeb0eca390a029edde5b6f.nii.gz/MD5E-s259089--76cfba7c9fbeb0eca390a029edde5b6f.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/26/pX/MD5E-s259698--51b3e1bbd8677200f1c9491dad64a35d.nii.gz/MD5E-s259698--51b3e1bbd8677200f1c9491dad64a35d.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/06/PK/MD5E-s286774--12ce879b698afecaa7e36a839b9a7bbe.nii.gz/MD5E-s286774--12ce879b698afecaa7e36a839b9a7bbe.nii.gz

SWU_1/sub-0027220/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Vq/MP/MD5E-s287433--8db23cf534dde1046258e92558da41ff.nii.gz/MD5E-s287433--8db23cf534dde1046258e92558da41ff.nii.gz

SWU_1/sub-0027220/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6p/0V/MD5E-s24814--f328090d5abc56b36db54af45eeb5b90.nii.gz/MD5E-s24814--f328090d5abc56b36db54af45eeb5b90.nii.gz

SWU_1/sub-0027220/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/81/W7/MD5E-s25343--e14cf5f002f872996e9f4df18fa4ff3f.nii.gz/MD5E-s25343--e14cf5f002f872996e9f4df18fa4ff3f.nii.gz

SWU_1/sub-0027220/ses-1/mri/aal3_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f4/8m/MD5E-s194257--5bdfba1603d6a03f6574d223df9e5ebc.nii.gz/MD5E-s194257--5bdfba1603d6a03f6574d223df9e5ebc.nii.gz

SWU_1/sub-0027220/ses-1/mri/aal3_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jq/5J/MD5E-s195228--e7381c5178921b1735d9b79ceeeeb1aa.nii.gz/MD5E-s195228--e7381c5178921b1735d9b79ceeeeb1aa.nii.gz

SWU_1/sub-0027220/ses-1/mri/anatomy3_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K4/q1/MD5E-s140911--eda7f8d334be8d9890cb57a4a32a26b1.nii.gz/MD5E-s140911--eda7f8d334be8d9890cb57a4a32a26b1.nii.gz

SWU_1/sub-0027220/ses-1/mri/anatomy3_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pm/86/MD5E-s140856--a11525c88511a5742b052a23f4d263c3.nii.gz/MD5E-s140856--a11525c88511a5742b052a23f4d263c3.nii.gz

SWU_1/sub-0027220/ses-1/mri/anon_misub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/z8/MD5E-s9665613--e7a3d830390900d71a16c918b16479b2.nii.gz/MD5E-s9665613--e7a3d830390900d71a16c918b16479b2.nii.gz

SWU_1/sub-0027220/ses-1/mri/anon_misub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/FV/qj/MD5E-s9653542--a3169993dbdb7b9a3f382da2245bc854.nii.gz/MD5E-s9653542--a3169993dbdb7b9a3f382da2245bc854.nii.gz

SWU_1/sub-0027220/ses-1/mri/anon_msub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5m/pp/MD5E-s10900637--6f9a110136042409a3cac071964d04f0.nii.gz/MD5E-s10900637--6f9a110136042409a3cac071964d04f0.nii.gz

SWU_1/sub-0027220/ses-1/mri/anon_msub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/58/Zq/MD5E-s10916280--4ff80cce2ded11f77572f869eff26959.nii.gz/MD5E-s10916280--4ff80cce2ded11f77572f869eff26959.nii.gz

SWU_1/sub-0027220/ses-1/mri/cat_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J4/qf/MD5E-s106431--99060e507faeaba77eb66210e0ae6df8.nii.gz/MD5E-s106431--99060e507faeaba77eb66210e0ae6df8.nii.gz

SWU_1/sub-0027220/ses-1/mri/cat_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/10/zV/MD5E-s106589--cd28b70850b3f78c700c3500fd425cbb.nii.gz/MD5E-s106589--cd28b70850b3f78c700c3500fd425cbb.nii.gz

SWU_1/sub-0027220/ses-1/mri/cobra_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xx/5p/MD5E-s50840--d034cb9bab1a276600a0896d2db0d4c4.nii.gz/MD5E-s50840--d034cb9bab1a276600a0896d2db0d4c4.nii.gz

SWU_1/sub-0027220/ses-1/mri/cobra_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/hammers_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027220/ses-1/mri/hammers_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/ibsr_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wJ/WZ/MD5E-s162398--7a562c0343c5f9c672a72c30a9070460.nii.gz/MD5E-s162398--7a562c0343c5f9c672a72c30a9070460.nii.gz

SWU_1/sub-0027220/ses-1/mri/ibsr_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/it_sub-0027220_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1x/4X/MD5E-s282--acb885fe171f47bfab468e73666412f8.mat/MD5E-s282--acb885fe171f47bfab468e73666412f8.mat

SWU_1/sub-0027220/ses-1/mri/it_sub-0027220_ses-1_run-1_T1w_rigid_reorient.mat

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SWU_1/sub-0027220/ses-1/mri/it_sub-0027220_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/it_sub-0027220_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/iy_sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/iy_sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/julichbrain_sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/julichbrain_sub-0027220_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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SWU_1/sub-0027220/ses-1/mri/lpba40_sub-0027220_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_1/sub-0027220/ses-1/mri/lpba40_sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp1sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp1sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp2sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp2sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp3sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/m0wp3sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/mori_sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/mori_sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/mwp1sub-0027220_ses-1_run-1_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/mwp1sub-0027220_ses-1_run-2_T1w.nii.gz

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SWU_1/sub-0027220/ses-1/mri/mwp2sub-0027220_ses-1_run-1_T1w.nii.gz

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