[DATALAD RUNCMD] Compute BMB_1/sub-0003057/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BMB_1/sub-0003057/ses-1/anat/sub-0003057_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BMB_1/sub-0003057/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BMB_1/sub-0003057/ses-1/label/catROI_sub-0003057_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MK/54/MD5E-s61301--42d47f97edc162b765f0644a61e101e3.mat/MD5E-s61301--42d47f97edc162b765f0644a61e101e3.mat

BMB_1/sub-0003057/ses-1/label/catROI_sub-0003057_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zp/0F/MD5E-s188957--1f6f566582680e0014885e120b03c9f3.xml/MD5E-s188957--1f6f566582680e0014885e120b03c9f3.xml

BMB_1/sub-0003057/ses-1/label/catROIs_sub-0003057_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/Zv/MD5E-s120008--3d8e92f5a7d54c6c9dbb9a9aca6b1dac.mat/MD5E-s120008--3d8e92f5a7d54c6c9dbb9a9aca6b1dac.mat

BMB_1/sub-0003057/ses-1/label/catROIs_sub-0003057_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M2/kg/MD5E-s332104--d6bd3c7061af1bab0a5ddf360b6a5552.xml/MD5E-s332104--d6bd3c7061af1bab0a5ddf360b6a5552.xml

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XJ/m0/MD5E-s168578--85c1dd8ac52817fcfcc19a159a25e4e8.nii.gz/MD5E-s168578--85c1dd8ac52817fcfcc19a159a25e4e8.nii.gz

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4Q/Kq/MD5E-s188292--74f5af5fd771af06aac5890a28ce4691.nii.gz/MD5E-s188292--74f5af5fd771af06aac5890a28ce4691.nii.gz

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jm/1j/MD5E-s255392--dc7f2fc7df84b020b147cc68c6a2f3ff.nii.gz/MD5E-s255392--dc7f2fc7df84b020b147cc68c6a2f3ff.nii.gz

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BMB_1/sub-0003057/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8F/Kz/MD5E-s284245--cb567e1a98932388e8123e5c12f81d6b.nii.gz/MD5E-s284245--cb567e1a98932388e8123e5c12f81d6b.nii.gz

BMB_1/sub-0003057/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BMB_1/sub-0003057/ses-1/mri/Tian_Subcortex_S2_7T_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VP/9W/MD5E-s24396--337c6ec485aac432866623a31c4e0f2a.nii.gz/MD5E-s24396--337c6ec485aac432866623a31c4e0f2a.nii.gz

BMB_1/sub-0003057/ses-1/mri/aal3_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BMB_1/sub-0003057/ses-1/mri/aal3_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g0/6Q/MD5E-s191508--d89c0f4b75676b98ba71b072e3c11cdc.nii.gz/MD5E-s191508--d89c0f4b75676b98ba71b072e3c11cdc.nii.gz

BMB_1/sub-0003057/ses-1/mri/anatomy3_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BMB_1/sub-0003057/ses-1/mri/anatomy3_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/Mz/MD5E-s139554--74c98785e95568b170598073e39927d6.nii.gz/MD5E-s139554--74c98785e95568b170598073e39927d6.nii.gz

BMB_1/sub-0003057/ses-1/mri/anon_misub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kv/28/MD5E-s6027468--29e202df1805939864d39eb3b1bca797.nii.gz/MD5E-s6027468--29e202df1805939864d39eb3b1bca797.nii.gz

BMB_1/sub-0003057/ses-1/mri/anon_msub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/XM/MD5E-s12951338--60af550df6bce7788092342b7bb41c14.nii.gz/MD5E-s12951338--60af550df6bce7788092342b7bb41c14.nii.gz

BMB_1/sub-0003057/ses-1/mri/cat_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/MV/MD5E-s102081--a221329f51b47dce56af9ecdfe67ed71.nii.gz/MD5E-s102081--a221329f51b47dce56af9ecdfe67ed71.nii.gz

BMB_1/sub-0003057/ses-1/mri/cobra_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BMB_1/sub-0003057/ses-1/mri/cobra_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/MQ/MD5E-s50630--9b91ff4487ba9951ed20930b56ffb444.nii.gz/MD5E-s50630--9b91ff4487ba9951ed20930b56ffb444.nii.gz

BMB_1/sub-0003057/ses-1/mri/hammers_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BMB_1/sub-0003057/ses-1/mri/hammers_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3J/qf/MD5E-s151000--0b73a61438e97d547a5cc656fbe68c8b.nii.gz/MD5E-s151000--0b73a61438e97d547a5cc656fbe68c8b.nii.gz

BMB_1/sub-0003057/ses-1/mri/ibsr_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BMB_1/sub-0003057/ses-1/mri/ibsr_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qx/3K/MD5E-s158714--373118520353fda0b9725889438e9e3a.nii.gz/MD5E-s158714--373118520353fda0b9725889438e9e3a.nii.gz

BMB_1/sub-0003057/ses-1/mri/it_sub-0003057_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/29/vj/MD5E-s283--0a01c40c720376b85247cfc2badb2d2b.mat/MD5E-s283--0a01c40c720376b85247cfc2badb2d2b.mat

BMB_1/sub-0003057/ses-1/mri/it_sub-0003057_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VQ/WF/MD5E-s285--e70fa7f83615e9fa3aaf4a585a2ca24d.mat/MD5E-s285--e70fa7f83615e9fa3aaf4a585a2ca24d.mat

BMB_1/sub-0003057/ses-1/mri/iy_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8v/62/MD5E-s47812724--26b4472570d37c0e67701500f697fc87.nii.gz/MD5E-s47812724--26b4472570d37c0e67701500f697fc87.nii.gz

BMB_1/sub-0003057/ses-1/mri/julichbrain_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BMB_1/sub-0003057/ses-1/mri/julichbrain_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6X/F0/MD5E-s203104--bd1575ae2faea85eb2ca59163dd060a2.nii.gz/MD5E-s203104--bd1575ae2faea85eb2ca59163dd060a2.nii.gz

BMB_1/sub-0003057/ses-1/mri/lpba40_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BMB_1/sub-0003057/ses-1/mri/lpba40_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZQ/06/MD5E-s147488--432fadd20a29663486aebc9941d12a9e.nii.gz/MD5E-s147488--432fadd20a29663486aebc9941d12a9e.nii.gz

BMB_1/sub-0003057/ses-1/mri/m0wp1sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VW/x8/MD5E-s2581911--90e27f6b71e3f3374839a2c32ef87526.nii.gz/MD5E-s2581911--90e27f6b71e3f3374839a2c32ef87526.nii.gz

BMB_1/sub-0003057/ses-1/mri/m0wp2sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/pj/MD5E-s2297910--5dd9fe1f751b8bb82083bf2cb1f57717.nii.gz/MD5E-s2297910--5dd9fe1f751b8bb82083bf2cb1f57717.nii.gz

BMB_1/sub-0003057/ses-1/mri/m0wp3sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mq/Vz/MD5E-s2572920--50b3f5a080ec70de32ef53a2242e0215.nii.gz/MD5E-s2572920--50b3f5a080ec70de32ef53a2242e0215.nii.gz

BMB_1/sub-0003057/ses-1/mri/mori_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BMB_1/sub-0003057/ses-1/mri/mori_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/Wz/MD5E-s177331--2c145fdef27de2e60a036da87b4619c1.nii.gz/MD5E-s177331--2c145fdef27de2e60a036da87b4619c1.nii.gz

BMB_1/sub-0003057/ses-1/mri/mwp1sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qw/ZV/MD5E-s2586193--0b1605c50246589fa76aa998b6fc38a3.nii.gz/MD5E-s2586193--0b1605c50246589fa76aa998b6fc38a3.nii.gz

BMB_1/sub-0003057/ses-1/mri/mwp2sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/vj/MD5E-s2293823--48b06cf8850644ae29d6d04a9917f19d.nii.gz/MD5E-s2293823--48b06cf8850644ae29d6d04a9917f19d.nii.gz

BMB_1/sub-0003057/ses-1/mri/mwp3sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0F/gK/MD5E-s2572071--34456a47abb30ae42bd1347efe457a0e.nii.gz/MD5E-s2572071--34456a47abb30ae42bd1347efe457a0e.nii.gz

BMB_1/sub-0003057/ses-1/mri/neuromorphometrics_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BMB_1/sub-0003057/ses-1/mri/neuromorphometrics_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/20/5J/MD5E-s205200--8cb106dd941f919b91076ce4c55d3d59.nii.gz/MD5E-s205200--8cb106dd941f919b91076ce4c55d3d59.nii.gz

BMB_1/sub-0003057/ses-1/mri/p0sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GG/x4/MD5E-s652444--2f77a23a0e784bef699eaaf126be9dec.nii.gz/MD5E-s652444--2f77a23a0e784bef699eaaf126be9dec.nii.gz

BMB_1/sub-0003057/ses-1/mri/p1sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/fz/MD5E-s689718--0091099b02be758b1ba5e03e0aa6ae5c.nii.gz/MD5E-s689718--0091099b02be758b1ba5e03e0aa6ae5c.nii.gz

BMB_1/sub-0003057/ses-1/mri/p2sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XX/3F/MD5E-s442463--e4a5f303e5e4cdc15064d147646f1a9d.nii.gz/MD5E-s442463--e4a5f303e5e4cdc15064d147646f1a9d.nii.gz

BMB_1/sub-0003057/ses-1/mri/p3sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/97/MD5E-s407115--b0378659c7c167c3be7d1119b6a802e2.nii.gz/MD5E-s407115--b0378659c7c167c3be7d1119b6a802e2.nii.gz

BMB_1/sub-0003057/ses-1/mri/rp1sub-0003057_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/WX/MD5E-s449293--8c4dcb652504458b80ffa7349637338a.nii.gz/MD5E-s449293--8c4dcb652504458b80ffa7349637338a.nii.gz

BMB_1/sub-0003057/ses-1/mri/rp2sub-0003057_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mW/Wp/MD5E-s301384--e57014f65202bb7200a9df3a4cba0a4a.nii.gz/MD5E-s301384--e57014f65202bb7200a9df3a4cba0a4a.nii.gz

BMB_1/sub-0003057/ses-1/mri/rp3sub-0003057_ses-1_run-1_T1w_affine.nii.gz

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BMB_1/sub-0003057/ses-1/mri/t_sub-0003057_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3v/6z/MD5E-s285--45c05106af175aeb401eca56d5040dfa.mat/MD5E-s285--45c05106af175aeb401eca56d5040dfa.mat

BMB_1/sub-0003057/ses-1/mri/t_sub-0003057_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VM/0Z/MD5E-s285--192586464fcf665c3db4e136b80496e6.mat/MD5E-s285--192586464fcf665c3db4e136b80496e6.mat

BMB_1/sub-0003057/ses-1/mri/thalamus_sub-0003057_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BMB_1/sub-0003057/ses-1/mri/thalamus_sub-0003057_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BMB_1/sub-0003057/ses-1/mri/wj_sub-0003057_ses-1_run-1_T1w.nii.gz

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