[DATALAD RUNCMD] Compute LMU_1/sub-0025340/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025340/ses-1/anat/sub-0025340_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025340/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025340/ses-1/label/catROI_sub-0025340_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/J1/MD5E-s57634--2f7cbec3c922ecbc33b81d20f2061397.mat/MD5E-s57634--2f7cbec3c922ecbc33b81d20f2061397.mat

LMU_1/sub-0025340/ses-1/label/catROI_sub-0025340_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KK/4j/MD5E-s188973--948b38c4e2969fd7e8372a2892796b0a.xml/MD5E-s188973--948b38c4e2969fd7e8372a2892796b0a.xml

LMU_1/sub-0025340/ses-1/label/catROIs_sub-0025340_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X2/MM/MD5E-s119988--d17d427d2708ed500d52bb4f37322b9d.mat/MD5E-s119988--d17d427d2708ed500d52bb4f37322b9d.mat

LMU_1/sub-0025340/ses-1/label/catROIs_sub-0025340_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KM/08/MD5E-s332075--4d1743fb32f5afb94d4ffc3a017c07cc.xml/MD5E-s332075--4d1743fb32f5afb94d4ffc3a017c07cc.xml

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xz/68/MD5E-s205277--be15b664097a622864f615a8e6721f40.nii.gz/MD5E-s205277--be15b664097a622864f615a8e6721f40.nii.gz

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jW/m5/MD5E-s230077--0707393e3b0efbb3e8470f3eff4f46b6.nii.gz/MD5E-s230077--0707393e3b0efbb3e8470f3eff4f46b6.nii.gz

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/jx/MD5E-s295195--2ece4409242181d84780016a1b8f95f9.nii.gz/MD5E-s295195--2ece4409242181d84780016a1b8f95f9.nii.gz

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025340/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8j/VJ/MD5E-s326700--c31da7758f69d8a3f1b9643d2de6ebf7.nii.gz/MD5E-s326700--c31da7758f69d8a3f1b9643d2de6ebf7.nii.gz

LMU_1/sub-0025340/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025340/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pq/V3/MD5E-s30185--18b0b45baf83998dc898c71f1b150790.nii.gz/MD5E-s30185--18b0b45baf83998dc898c71f1b150790.nii.gz

LMU_1/sub-0025340/ses-1/mri/aal3_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025340/ses-1/mri/aal3_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/34/MD5E-s234243--59c7819e9397b92bcf635fb542c60854.nii.gz/MD5E-s234243--59c7819e9397b92bcf635fb542c60854.nii.gz

LMU_1/sub-0025340/ses-1/mri/anatomy3_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025340/ses-1/mri/anatomy3_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/32/qv/MD5E-s165607--de73db1259eb042b287bf7db4773199e.nii.gz/MD5E-s165607--de73db1259eb042b287bf7db4773199e.nii.gz

LMU_1/sub-0025340/ses-1/mri/anon_misub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V5/Z1/MD5E-s5961243--caece1b8380532c11d68587af88e1d68.nii.gz/MD5E-s5961243--caece1b8380532c11d68587af88e1d68.nii.gz

LMU_1/sub-0025340/ses-1/mri/anon_msub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vX/G9/MD5E-s13056548--8b9655b95d0da49433609fc4c28b13df.nii.gz/MD5E-s13056548--8b9655b95d0da49433609fc4c28b13df.nii.gz

LMU_1/sub-0025340/ses-1/mri/cat_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/9x/MD5E-s126939--3977d909b06bfde04aba6d9c66d4c902.nii.gz/MD5E-s126939--3977d909b06bfde04aba6d9c66d4c902.nii.gz

LMU_1/sub-0025340/ses-1/mri/cobra_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025340/ses-1/mri/cobra_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8K/qF/MD5E-s60042--d6661f7dd9de84ce15865f400096ce51.nii.gz/MD5E-s60042--d6661f7dd9de84ce15865f400096ce51.nii.gz

LMU_1/sub-0025340/ses-1/mri/hammers_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025340/ses-1/mri/hammers_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8g/m9/MD5E-s182136--56bea7b58ef3f4761e02e091be7d4e3e.nii.gz/MD5E-s182136--56bea7b58ef3f4761e02e091be7d4e3e.nii.gz

LMU_1/sub-0025340/ses-1/mri/ibsr_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025340/ses-1/mri/ibsr_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mF/V9/MD5E-s190543--350a1ba46f3e0835bcc563c7fa4ce70d.nii.gz/MD5E-s190543--350a1ba46f3e0835bcc563c7fa4ce70d.nii.gz

LMU_1/sub-0025340/ses-1/mri/it_sub-0025340_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4j/Qw/MD5E-s283--279046823e1e3e14457ff33eb48e2e74.mat/MD5E-s283--279046823e1e3e14457ff33eb48e2e74.mat

LMU_1/sub-0025340/ses-1/mri/it_sub-0025340_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/gp/MD5E-s284--de0507befe9863496b9595a1879aad78.mat/MD5E-s284--de0507befe9863496b9595a1879aad78.mat

LMU_1/sub-0025340/ses-1/mri/iy_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3f/zv/MD5E-s53982014--df44bc0be4154fba2f870b9bb201100e.nii.gz/MD5E-s53982014--df44bc0be4154fba2f870b9bb201100e.nii.gz

LMU_1/sub-0025340/ses-1/mri/julichbrain_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025340/ses-1/mri/julichbrain_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/q8/MD5E-s245124--9b3c1c5ee475d6b7cdd040e48b81b137.nii.gz/MD5E-s245124--9b3c1c5ee475d6b7cdd040e48b81b137.nii.gz

LMU_1/sub-0025340/ses-1/mri/lpba40_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025340/ses-1/mri/lpba40_sub-0025340_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/7q/Vg/MD5E-s180439--aec7a26664c01b1048d30fb40acedcc3.nii.gz/MD5E-s180439--aec7a26664c01b1048d30fb40acedcc3.nii.gz

LMU_1/sub-0025340/ses-1/mri/m0wp1sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VF/m0/MD5E-s2581971--e68a5b2b54cd99f8b4bfd0a3f15a7a5d.nii.gz/MD5E-s2581971--e68a5b2b54cd99f8b4bfd0a3f15a7a5d.nii.gz

LMU_1/sub-0025340/ses-1/mri/m0wp2sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q8/g4/MD5E-s2301300--8234ea99e066afde81a36732fe02ea27.nii.gz/MD5E-s2301300--8234ea99e066afde81a36732fe02ea27.nii.gz

LMU_1/sub-0025340/ses-1/mri/m0wp3sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wQ/Q0/MD5E-s2527597--b967ca9cf3ed99fe75bae100943a07cb.nii.gz/MD5E-s2527597--b967ca9cf3ed99fe75bae100943a07cb.nii.gz

LMU_1/sub-0025340/ses-1/mri/mori_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025340/ses-1/mri/mori_sub-0025340_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/2q/z1/MD5E-s210861--c164c909a546dfdf45aee5addd6bc839.nii.gz/MD5E-s210861--c164c909a546dfdf45aee5addd6bc839.nii.gz

LMU_1/sub-0025340/ses-1/mri/mwp1sub-0025340_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025340/ses-1/mri/mwp2sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w8/k0/MD5E-s2297812--96b1fd0808b7f254cdf5f8592ee718dd.nii.gz/MD5E-s2297812--96b1fd0808b7f254cdf5f8592ee718dd.nii.gz

LMU_1/sub-0025340/ses-1/mri/mwp3sub-0025340_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025340/ses-1/mri/neuromorphometrics_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

LMU_1/sub-0025340/ses-1/mri/neuromorphometrics_sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025340/ses-1/mri/p0sub-0025340_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/3p/MD5E-s775656--ccbd8383250a9bfc211b85167f2bc7db.nii.gz/MD5E-s775656--ccbd8383250a9bfc211b85167f2bc7db.nii.gz

LMU_1/sub-0025340/ses-1/mri/p1sub-0025340_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/q2/Fw/MD5E-s831582--66634a1d14f685b7a32b269286bdcc1e.nii.gz/MD5E-s831582--66634a1d14f685b7a32b269286bdcc1e.nii.gz

LMU_1/sub-0025340/ses-1/mri/p2sub-0025340_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025340/ses-1/mri/p3sub-0025340_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025340/ses-1/mri/rp1sub-0025340_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025340/ses-1/mri/rp2sub-0025340_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025340/ses-1/mri/rp3sub-0025340_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025340/ses-1/mri/t_sub-0025340_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025340/ses-1/mri/t_sub-0025340_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025340/ses-1/mri/thalamus_sub-0025340_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025340/ses-1/mri/thalamus_sub-0025340_ses-1_run-1_T1w.nii.gz

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