[DATALAD RUNCMD] Compute BNU_1/sub-0025887/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025887/ses-1/anat/sub-0025887_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025887/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025887/ses-1/label/catROI_sub-0025887_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pk/f5/MD5E-s58082--87e4f21baa3e4a3ca1e8edbd4836bb27.mat/MD5E-s58082--87e4f21baa3e4a3ca1e8edbd4836bb27.mat

BNU_1/sub-0025887/ses-1/label/catROI_sub-0025887_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q0/5k/MD5E-s188792--767bbbd1bf117dcd92c0f8e03a09a92c.xml/MD5E-s188792--767bbbd1bf117dcd92c0f8e03a09a92c.xml

BNU_1/sub-0025887/ses-1/label/catROIs_sub-0025887_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FQ/Vk/MD5E-s120006--30c2160bbe19bf868ffdb413593778b2.mat/MD5E-s120006--30c2160bbe19bf868ffdb413593778b2.mat

BNU_1/sub-0025887/ses-1/label/catROIs_sub-0025887_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/Xm/MD5E-s332137--26ef889a14f676ed8382cc31f3d0e1f3.xml/MD5E-s332137--26ef889a14f676ed8382cc31f3d0e1f3.xml

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/wZ/MD5E-s145568--8b4a3dcf7f40459b7570f67d07a24b46.nii.gz/MD5E-s145568--8b4a3dcf7f40459b7570f67d07a24b46.nii.gz

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/99/K3/MD5E-s164847--770464ffcd9dd7ea69037157cac002d4.nii.gz/MD5E-s164847--770464ffcd9dd7ea69037157cac002d4.nii.gz

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/F4/MD5E-s221902--4e763f5287a87677d995d541fa2faced.nii.gz/MD5E-s221902--4e763f5287a87677d995d541fa2faced.nii.gz

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025887/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5x/Mj/MD5E-s246035--765b5c93970179dddf8c1839ec39479f.nii.gz/MD5E-s246035--765b5c93970179dddf8c1839ec39479f.nii.gz

BNU_1/sub-0025887/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025887/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J9/Mf/MD5E-s20743--54ca4fbe9905ad5b8904938c38992583.nii.gz/MD5E-s20743--54ca4fbe9905ad5b8904938c38992583.nii.gz

BNU_1/sub-0025887/ses-1/mri/aal3_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025887/ses-1/mri/aal3_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ww/m6/MD5E-s167329--129d443e4c7c76bd57b529d94f1d8afa.nii.gz/MD5E-s167329--129d443e4c7c76bd57b529d94f1d8afa.nii.gz

BNU_1/sub-0025887/ses-1/mri/anatomy3_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025887/ses-1/mri/anatomy3_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/XW/MD5E-s118943--160794200ec5dd52d463a89af112b616.nii.gz/MD5E-s118943--160794200ec5dd52d463a89af112b616.nii.gz

BNU_1/sub-0025887/ses-1/mri/anon_misub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/F5/MD5E-s4174162--9c14f1663c119c956fc42c5757dac799.nii.gz/MD5E-s4174162--9c14f1663c119c956fc42c5757dac799.nii.gz

BNU_1/sub-0025887/ses-1/mri/anon_msub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/3Z/MD5E-s10481344--b8755177828850719315fbe7414c34de.nii.gz/MD5E-s10481344--b8755177828850719315fbe7414c34de.nii.gz

BNU_1/sub-0025887/ses-1/mri/cat_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kF/gj/MD5E-s90598--78f71f6640939a515c0bb1bc9454b3d7.nii.gz/MD5E-s90598--78f71f6640939a515c0bb1bc9454b3d7.nii.gz

BNU_1/sub-0025887/ses-1/mri/cobra_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025887/ses-1/mri/cobra_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xf/G6/MD5E-s41652--3068a682bc9a8b3a93d699b9de802dc1.nii.gz/MD5E-s41652--3068a682bc9a8b3a93d699b9de802dc1.nii.gz

BNU_1/sub-0025887/ses-1/mri/hammers_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025887/ses-1/mri/hammers_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x3/jz/MD5E-s133064--5dfd8246a1f473f5264670d49b4806cb.nii.gz/MD5E-s133064--5dfd8246a1f473f5264670d49b4806cb.nii.gz

BNU_1/sub-0025887/ses-1/mri/ibsr_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025887/ses-1/mri/ibsr_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/Gw/MD5E-s140118--69111ac3c6eb43b8f276109dbd9f0c50.nii.gz/MD5E-s140118--69111ac3c6eb43b8f276109dbd9f0c50.nii.gz

BNU_1/sub-0025887/ses-1/mri/it_sub-0025887_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zG/mQ/MD5E-s284--6184415724408e8cd1ed8bfcd58c44c8.mat/MD5E-s284--6184415724408e8cd1ed8bfcd58c44c8.mat

BNU_1/sub-0025887/ses-1/mri/it_sub-0025887_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f1/qk/MD5E-s284--409c72a7b97df6bde89baefae2179377.mat/MD5E-s284--409c72a7b97df6bde89baefae2179377.mat

BNU_1/sub-0025887/ses-1/mri/iy_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/7G/MD5E-s35818703--e7cb6012e64ab8f3efec8be919089c7c.nii.gz/MD5E-s35818703--e7cb6012e64ab8f3efec8be919089c7c.nii.gz

BNU_1/sub-0025887/ses-1/mri/julichbrain_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025887/ses-1/mri/julichbrain_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p1/1K/MD5E-s178719--444ba38d889c031fcb53de20c8d3f6fd.nii.gz/MD5E-s178719--444ba38d889c031fcb53de20c8d3f6fd.nii.gz

BNU_1/sub-0025887/ses-1/mri/lpba40_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025887/ses-1/mri/lpba40_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k4/fX/MD5E-s130294--fb825a3b1d1c408050dbbe42491a25a0.nii.gz/MD5E-s130294--fb825a3b1d1c408050dbbe42491a25a0.nii.gz

BNU_1/sub-0025887/ses-1/mri/m0wp1sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/5Q/MD5E-s2584048--f4130ed10d3e453622b8dbdbcb85a777.nii.gz/MD5E-s2584048--f4130ed10d3e453622b8dbdbcb85a777.nii.gz

BNU_1/sub-0025887/ses-1/mri/m0wp2sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vw/WX/MD5E-s2289041--75dabec6a224b1ffa0b84ebdd891e198.nii.gz/MD5E-s2289041--75dabec6a224b1ffa0b84ebdd891e198.nii.gz

BNU_1/sub-0025887/ses-1/mri/m0wp3sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/XM/MD5E-s2484214--70c9d7f84169d21f1c52679e97eb8e56.nii.gz/MD5E-s2484214--70c9d7f84169d21f1c52679e97eb8e56.nii.gz

BNU_1/sub-0025887/ses-1/mri/mori_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_1/sub-0025887/ses-1/mri/mori_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pj/zG/MD5E-s153460--b57900bdea5a571ea0c061b8f57053eb.nii.gz/MD5E-s153460--b57900bdea5a571ea0c061b8f57053eb.nii.gz

BNU_1/sub-0025887/ses-1/mri/mwp1sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P1/g2/MD5E-s2585669--c7cc3629b89fc60ba2178604b9d1569e.nii.gz/MD5E-s2585669--c7cc3629b89fc60ba2178604b9d1569e.nii.gz

BNU_1/sub-0025887/ses-1/mri/mwp2sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vV/Zw/MD5E-s2283113--bd213e25e7d8b9e9e3b39ea303d2f744.nii.gz/MD5E-s2283113--bd213e25e7d8b9e9e3b39ea303d2f744.nii.gz

BNU_1/sub-0025887/ses-1/mri/mwp3sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kj/GW/MD5E-s2480605--38d71f3aa75b30322edafd1d632e4c68.nii.gz/MD5E-s2480605--38d71f3aa75b30322edafd1d632e4c68.nii.gz

BNU_1/sub-0025887/ses-1/mri/neuromorphometrics_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_1/sub-0025887/ses-1/mri/neuromorphometrics_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W5/PX/MD5E-s181524--cbde1ed7d5dd7c0e6fc4bb16766d9ca9.nii.gz/MD5E-s181524--cbde1ed7d5dd7c0e6fc4bb16766d9ca9.nii.gz

BNU_1/sub-0025887/ses-1/mri/p0sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/m1/MD5E-s768607--989c7c249f008a5af623070490b449ee.nii.gz/MD5E-s768607--989c7c249f008a5af623070490b449ee.nii.gz

BNU_1/sub-0025887/ses-1/mri/p1sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/3x/MD5E-s778838--ec19463322b43b40ec8e96c122be00e7.nii.gz/MD5E-s778838--ec19463322b43b40ec8e96c122be00e7.nii.gz

BNU_1/sub-0025887/ses-1/mri/p2sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kj/k5/MD5E-s525757--df7ef40224c1cbade6f302aada26ede4.nii.gz/MD5E-s525757--df7ef40224c1cbade6f302aada26ede4.nii.gz

BNU_1/sub-0025887/ses-1/mri/p3sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J0/2j/MD5E-s479703--bf7e07cf6f89a5f97af53f5f495109e0.nii.gz/MD5E-s479703--bf7e07cf6f89a5f97af53f5f495109e0.nii.gz

BNU_1/sub-0025887/ses-1/mri/rp1sub-0025887_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mw/jp/MD5E-s445610--df361275f316e9a8cead679715edf833.nii.gz/MD5E-s445610--df361275f316e9a8cead679715edf833.nii.gz

BNU_1/sub-0025887/ses-1/mri/rp2sub-0025887_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gZ/ZV/MD5E-s302696--4caeeca08d9b6563f153818a0158edbd.nii.gz/MD5E-s302696--4caeeca08d9b6563f153818a0158edbd.nii.gz

BNU_1/sub-0025887/ses-1/mri/rp3sub-0025887_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_1/sub-0025887/ses-1/mri/t_sub-0025887_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k1/Wq/MD5E-s283--ccd8f8267e3af4249e75b01dcb5b2d76.mat/MD5E-s283--ccd8f8267e3af4249e75b01dcb5b2d76.mat

BNU_1/sub-0025887/ses-1/mri/t_sub-0025887_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/6W/MD5E-s283--4e2c7ec8151078a1cb36bdf28fb0064b.mat/MD5E-s283--4e2c7ec8151078a1cb36bdf28fb0064b.mat

BNU_1/sub-0025887/ses-1/mri/thalamus_sub-0025887_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_1/sub-0025887/ses-1/mri/thalamus_sub-0025887_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/0m/MD5E-s13504--8cd8dac9d2ced5263d9850994f3f4eaf.nii.gz/MD5E-s13504--8cd8dac9d2ced5263d9850994f3f4eaf.nii.gz

BNU_1/sub-0025887/ses-1/mri/wj_sub-0025887_ses-1_run-1_T1w.nii.gz

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