[DATALAD RUNCMD] Compute NYU_2/sub-0025102/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025102/ses-1/anat/sub-0025102_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025102/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025102/ses-1/label/catROI_sub-0025102_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3M/J3/MD5E-s57794--03133edf6cc8d6a1b29964586e7e7ebb.mat/MD5E-s57794--03133edf6cc8d6a1b29964586e7e7ebb.mat

NYU_2/sub-0025102/ses-1/label/catROI_sub-0025102_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9m/VW/MD5E-s188804--14c265fb77eb7a94555e38926c36644e.xml/MD5E-s188804--14c265fb77eb7a94555e38926c36644e.xml

NYU_2/sub-0025102/ses-1/label/catROI_sub-0025102_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/7f/2V/MD5E-s57752--3bd2f0cf34ae0c7e07e239a7ea7fb0db.mat/MD5E-s57752--3bd2f0cf34ae0c7e07e239a7ea7fb0db.mat

NYU_2/sub-0025102/ses-1/label/catROI_sub-0025102_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kg/Vm/MD5E-s188828--80b736fd90186d42671c0f1acd636ff4.xml/MD5E-s188828--80b736fd90186d42671c0f1acd636ff4.xml

NYU_2/sub-0025102/ses-1/label/catROIs_sub-0025102_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/9F/MD5E-s120185--7668c72d3503134d2088d1fb1bb0d154.mat/MD5E-s120185--7668c72d3503134d2088d1fb1bb0d154.mat

NYU_2/sub-0025102/ses-1/label/catROIs_sub-0025102_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/27/p8/MD5E-s332127--7599702201dffdb155c89aa9a4af1844.xml/MD5E-s332127--7599702201dffdb155c89aa9a4af1844.xml

NYU_2/sub-0025102/ses-1/label/catROIs_sub-0025102_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8F/P3/MD5E-s120160--4594e5379ba53df0decbaad36e793803.mat/MD5E-s120160--4594e5379ba53df0decbaad36e793803.mat

NYU_2/sub-0025102/ses-1/label/catROIs_sub-0025102_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/kz/XF/MD5E-s332178--d52725269f1fdfe8964b44d6ae0d08f7.xml/MD5E-s332178--d52725269f1fdfe8964b44d6ae0d08f7.xml

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7x/3Z/MD5E-s140403--7687364849fac8f835b79941478d0c2f.nii.gz/MD5E-s140403--7687364849fac8f835b79941478d0c2f.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9P/Zm/MD5E-s140388--b77f34d121f87c335ec4b01220f2d484.nii.gz/MD5E-s140388--b77f34d121f87c335ec4b01220f2d484.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9v/Fj/MD5E-s155304--ed9996e84ba7d564a21741416bc32648.nii.gz/MD5E-s155304--ed9996e84ba7d564a21741416bc32648.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/W7/kX/MD5E-s155866--66761679f8c7c16ba62b49b289796553.nii.gz/MD5E-s155866--66761679f8c7c16ba62b49b289796553.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/30/XF/MD5E-s210091--114f02ceed97cf317ed8fa162467f7e3.nii.gz/MD5E-s210091--114f02ceed97cf317ed8fa162467f7e3.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/96/px/MD5E-s210888--bc9c54658395cd89aecd2338f8f89d3b.nii.gz/MD5E-s210888--bc9c54658395cd89aecd2338f8f89d3b.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zX/V4/MD5E-s231678--dbee8eb15d1fd73c7543edc0a6632e1e.nii.gz/MD5E-s231678--dbee8eb15d1fd73c7543edc0a6632e1e.nii.gz

NYU_2/sub-0025102/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mW/ZP/MD5E-s232703--c9b0698283916f03221c7fc52438e88c.nii.gz/MD5E-s232703--c9b0698283916f03221c7fc52438e88c.nii.gz

NYU_2/sub-0025102/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MF/v6/MD5E-s18560--18c19363e4d29b063d44710ad722f6c3.nii.gz/MD5E-s18560--18c19363e4d29b063d44710ad722f6c3.nii.gz

NYU_2/sub-0025102/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f6/zx/MD5E-s18912--59fa24c9ff4c6b354883e79ca6b771fc.nii.gz/MD5E-s18912--59fa24c9ff4c6b354883e79ca6b771fc.nii.gz

NYU_2/sub-0025102/ses-1/mri/aal3_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/mj/MD5E-s157055--39b4a624a42aff2a978b131b866656ce.nii.gz/MD5E-s157055--39b4a624a42aff2a978b131b866656ce.nii.gz

NYU_2/sub-0025102/ses-1/mri/aal3_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GX/3f/MD5E-s157508--e9e7ab7245e2f15efc45426d3626cf5a.nii.gz/MD5E-s157508--e9e7ab7245e2f15efc45426d3626cf5a.nii.gz

NYU_2/sub-0025102/ses-1/mri/anatomy3_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025102/ses-1/mri/anatomy3_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1M/pg/MD5E-s112518--b363b523dc24b1afe9c6ae30692ab6c3.nii.gz/MD5E-s112518--b363b523dc24b1afe9c6ae30692ab6c3.nii.gz

NYU_2/sub-0025102/ses-1/mri/anon_misub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/anon_misub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JP/qG/MD5E-s3508992--41fb1c4e5de66529e2cabfc9d783732a.nii.gz/MD5E-s3508992--41fb1c4e5de66529e2cabfc9d783732a.nii.gz

NYU_2/sub-0025102/ses-1/mri/anon_msub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/anon_msub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025102/ses-1/mri/cat_sub-0025102_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/34/47/MD5E-s81407--81c7cba7b5ce5336d3866e74c55f7203.nii.gz/MD5E-s81407--81c7cba7b5ce5336d3866e74c55f7203.nii.gz

NYU_2/sub-0025102/ses-1/mri/cat_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vk/qJ/MD5E-s81831--c1f9c4b96ab87ca299b747db389de40c.nii.gz/MD5E-s81831--c1f9c4b96ab87ca299b747db389de40c.nii.gz

NYU_2/sub-0025102/ses-1/mri/cobra_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/cobra_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025102/ses-1/mri/hammers_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/hammers_sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/ibsr_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/ibsr_sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/it_sub-0025102_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vf/f5/MD5E-s282--495eeabb2706dfd863b61e55bf8c191e.mat/MD5E-s282--495eeabb2706dfd863b61e55bf8c191e.mat

NYU_2/sub-0025102/ses-1/mri/it_sub-0025102_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025102/ses-1/mri/it_sub-0025102_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025102/ses-1/mri/it_sub-0025102_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025102/ses-1/mri/iy_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/iy_sub-0025102_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025102/ses-1/mri/julichbrain_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/julichbrain_sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/lpba40_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/lpba40_sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp1sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp1sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp2sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp2sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp3sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/m0wp3sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/mori_sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/mori_sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/mwp1sub-0025102_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/mwp1sub-0025102_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025102/ses-1/mri/mwp2sub-0025102_ses-1_run-1_T1w.nii.gz

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