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[DATALAD RUNCMD] Compute SWU_4/sub-0025666/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025666/ses-1/anat/sub-0025666_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025666/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^
Felix Hoffstaedter 7 months ago
parent
c560c3c474
commit
27dd347ed6
100 changed files with 99 additions and 0 deletions
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  2. 1 0
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  3. 1 0
      SWU_4/sub-0025666/ses-1/label/catROIs_sub-0025666_ses-1_run-1_T1w.mat
  4. 1 0
      SWU_4/sub-0025666/ses-1/label/catROIs_sub-0025666_ses-1_run-1_T1w.xml
  5. 1 0
      SWU_4/sub-0025666/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.csv
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  52. 1 0
      SWU_4/sub-0025666/ses-1/mri/t_sub-0025666_ses-1_run-1_T1w_affine_reorient.mat
  53. 1 0
      SWU_4/sub-0025666/ses-1/mri/t_sub-0025666_ses-1_run-1_T1w_rigid_reorient.mat
  54. 1 0
      SWU_4/sub-0025666/ses-1/mri/thalamus_sub-0025666_ses-1_run-1_T1w.csv
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      SWU_4/sub-0025666/ses-1/mri/thalamus_sub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wj_sub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wmisub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wmsub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wp0sub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wp1sub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/wp2sub-0025666_ses-1_run-1_T1w.nii.gz
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      SWU_4/sub-0025666/ses-1/mri/y_sub-0025666_ses-1_run-1_T1w.nii.gz
  64. 1 0
      SWU_4/sub-0025666/ses-1/report/cat_sub-0025666_ses-1_run-1_T1w.mat
  65. 1 0
      SWU_4/sub-0025666/ses-1/report/cat_sub-0025666_ses-1_run-1_T1w.xml
  66. 1 0
      SWU_4/sub-0025666/ses-1/report/catlog_sub-0025666_ses-1_run-1_T1w.nii.txt
  67. 1 0
      SWU_4/sub-0025666/ses-1/report/catreport_sub-0025666_ses-1_run-1_T1w.pdf
  68. 1 0
      SWU_4/sub-0025666/ses-1/report/catreportj_sub-0025666_ses-1_run-1_T1w.jpg
  69. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.area.sub-0025666_ses-1_run-1_T1w
  70. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.central.sub-0025666_ses-1_run-1_T1w.gii
  71. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.depth.sub-0025666_ses-1_run-1_T1w
  72. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.edgemap32k.sub-0025666_ses-1_run-1_T1w.mat
  73. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.fractaldimension.sub-0025666_ses-1_run-1_T1w
  74. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.gmv.sub-0025666_ses-1_run-1_T1w
  75. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.gyrification.sub-0025666_ses-1_run-1_T1w
  76. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.pbt.sub-0025666_ses-1_run-1_T1w
  77. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.sphere.reg.sub-0025666_ses-1_run-1_T1w.gii
  78. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.sphere.sub-0025666_ses-1_run-1_T1w.gii
  79. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.thickness.sub-0025666_ses-1_run-1_T1w
  80. 1 0
      SWU_4/sub-0025666/ses-1/surf/lh.toroGI20mm.sub-0025666_ses-1_run-1_T1w
  81. 1 0
      SWU_4/sub-0025666/ses-1/surf/rh.area.sub-0025666_ses-1_run-1_T1w
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      SWU_4/sub-0025666/ses-1/surf/rh.depth.sub-0025666_ses-1_run-1_T1w
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      SWU_4/sub-0025666/ses-1/surf/rh.gmv.sub-0025666_ses-1_run-1_T1w
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      SWU_4/sub-0025666/ses-1/surf/s22.mesh.fractaldimension.resampled_32k.sub-0025666_ses-1_run-1_T1w.gii

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SWU_4/sub-0025666/ses-1/label/catROI_sub-0025666_ses-1_run-1_T1w.mat
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+../../../../.git/annex/objects/j6/mg/MD5E-s61212--5ed5e1bff835626e1d584645c26731cf.mat/MD5E-s61212--5ed5e1bff835626e1d584645c26731cf.mat

+ 1 - 0
SWU_4/sub-0025666/ses-1/label/catROI_sub-0025666_ses-1_run-1_T1w.xml
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+../../../../.git/annex/objects/20/g3/MD5E-s188713--47b3d422d0f36ef0c41bbfd5817110a4.xml/MD5E-s188713--47b3d422d0f36ef0c41bbfd5817110a4.xml

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SWU_4/sub-0025666/ses-1/label/catROIs_sub-0025666_ses-1_run-1_T1w.mat
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SWU_4/sub-0025666/ses-1/label/catROIs_sub-0025666_ses-1_run-1_T1w.xml
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+../../../../.git/annex/objects/FW/5w/MD5E-s332086--0ee721f52ddf4b097ae5295a1a139fbb.xml/MD5E-s332086--0ee721f52ddf4b097ae5295a1a139fbb.xml

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.csv
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+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.nii.gz
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+../../../../.git/annex/objects/5x/z4/MD5E-s171693--c1aad0572abe73df547faf5099dd1433.nii.gz/MD5E-s171693--c1aad0572abe73df547faf5099dd1433.nii.gz

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.csv
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+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.nii.gz
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+../../../../.git/annex/objects/K4/w2/MD5E-s190590--9d2446988dd88ef38347787c096cc096.nii.gz/MD5E-s190590--9d2446988dd88ef38347787c096cc096.nii.gz

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.csv
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+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.nii.gz
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+../../../../.git/annex/objects/gq/3p/MD5E-s257960--9b859ead7fd4f0b103533b951559a5b2.nii.gz/MD5E-s257960--9b859ead7fd4f0b103533b951559a5b2.nii.gz

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SWU_4/sub-0025666/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025666_ses-1_run-1_T1w.csv
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SWU_4/sub-0025666/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025666_ses-1_run-1_T1w.csv
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+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

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SWU_4/sub-0025666/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025666_ses-1_run-1_T1w.nii.gz
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+../../../../.git/annex/objects/Z6/8m/MD5E-s24534--763c32b26336e9c4b57d4db12c7b4179.nii.gz/MD5E-s24534--763c32b26336e9c4b57d4db12c7b4179.nii.gz

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SWU_4/sub-0025666/ses-1/mri/aal3_sub-0025666_ses-1_run-1_T1w.csv
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