[DATALAD RUNCMD] Compute NYU_2/sub-0025070/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025070/ses-1/anat/sub-0025070_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025070/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025070/ses-1/label/catROI_sub-0025070_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/Kv/MD5E-s58054--83aa641b9bb20cba7b1795e05db4246d.mat/MD5E-s58054--83aa641b9bb20cba7b1795e05db4246d.mat

NYU_2/sub-0025070/ses-1/label/catROI_sub-0025070_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P6/6f/MD5E-s188810--f5d9c9dc97ce5cf2550378ade28e6e4e.xml/MD5E-s188810--f5d9c9dc97ce5cf2550378ade28e6e4e.xml

NYU_2/sub-0025070/ses-1/label/catROIs_sub-0025070_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xJ/WM/MD5E-s120237--64b5d7c35006752c5bb0f08f10533797.mat/MD5E-s120237--64b5d7c35006752c5bb0f08f10533797.mat

NYU_2/sub-0025070/ses-1/label/catROIs_sub-0025070_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qm/m7/MD5E-s332177--7aee22f2c1b751fa809cca9bf79793f1.xml/MD5E-s332177--7aee22f2c1b751fa809cca9bf79793f1.xml

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/qg/MD5E-s155276--ece0b92f6885e457f5de624b659d3cef.nii.gz/MD5E-s155276--ece0b92f6885e457f5de624b659d3cef.nii.gz

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/WZ/MD5E-s173526--5ee0174d489775700bb18c132e1b01de.nii.gz/MD5E-s173526--5ee0174d489775700bb18c132e1b01de.nii.gz

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XV/gQ/MD5E-s231618--32eb41aa3688a48b97d8b0d2b503d00d.nii.gz/MD5E-s231618--32eb41aa3688a48b97d8b0d2b503d00d.nii.gz

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

NYU_2/sub-0025070/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/F7/MD5E-s258015--3b04be4f8a35d05fbb8ae57cec143eb1.nii.gz/MD5E-s258015--3b04be4f8a35d05fbb8ae57cec143eb1.nii.gz

NYU_2/sub-0025070/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

NYU_2/sub-0025070/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/46/MD5E-s20048--9c8875beef2a19fe1f7e3a692ddcf9cb.nii.gz/MD5E-s20048--9c8875beef2a19fe1f7e3a692ddcf9cb.nii.gz

NYU_2/sub-0025070/ses-1/mri/aal3_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

NYU_2/sub-0025070/ses-1/mri/aal3_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jk/JQ/MD5E-s175753--02df54d63f91ab030f3da80cf2501fed.nii.gz/MD5E-s175753--02df54d63f91ab030f3da80cf2501fed.nii.gz

NYU_2/sub-0025070/ses-1/mri/anatomy3_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

NYU_2/sub-0025070/ses-1/mri/anatomy3_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ww/jk/MD5E-s123990--9119a2bf9cb7d100ca13d596b98ae568.nii.gz/MD5E-s123990--9119a2bf9cb7d100ca13d596b98ae568.nii.gz

NYU_2/sub-0025070/ses-1/mri/anon_misub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/64/GM/MD5E-s3860603--56971987fc5711c0ef8b08dd00df4a50.nii.gz/MD5E-s3860603--56971987fc5711c0ef8b08dd00df4a50.nii.gz

NYU_2/sub-0025070/ses-1/mri/anon_msub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/vZ/MD5E-s7644946--b88aa23010bbe09979b3521aeb852be4.nii.gz/MD5E-s7644946--b88aa23010bbe09979b3521aeb852be4.nii.gz

NYU_2/sub-0025070/ses-1/mri/cat_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/4q/MD5E-s91681--0d2ea98cd098835be03072258e703ac6.nii.gz/MD5E-s91681--0d2ea98cd098835be03072258e703ac6.nii.gz

NYU_2/sub-0025070/ses-1/mri/cobra_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

NYU_2/sub-0025070/ses-1/mri/cobra_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pQ/9q/MD5E-s42883--f2dbc781b89fd26a556269423b9d9bbc.nii.gz/MD5E-s42883--f2dbc781b89fd26a556269423b9d9bbc.nii.gz

NYU_2/sub-0025070/ses-1/mri/hammers_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

NYU_2/sub-0025070/ses-1/mri/hammers_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/69/q1/MD5E-s136524--c863ce52c301eaf453ab0132bbb41102.nii.gz/MD5E-s136524--c863ce52c301eaf453ab0132bbb41102.nii.gz

NYU_2/sub-0025070/ses-1/mri/ibsr_sub-0025070_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

NYU_2/sub-0025070/ses-1/mri/ibsr_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PZ/4g/MD5E-s146022--afdbb47df7e3acb83eb87625532a49eb.nii.gz/MD5E-s146022--afdbb47df7e3acb83eb87625532a49eb.nii.gz

NYU_2/sub-0025070/ses-1/mri/it_sub-0025070_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/g1/MD5E-s284--cb71b347132887052ab0bec7f7157a27.mat/MD5E-s284--cb71b347132887052ab0bec7f7157a27.mat

NYU_2/sub-0025070/ses-1/mri/it_sub-0025070_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kg/QG/MD5E-s283--3df747318fdcffe2df5413ef3ca539ed.mat/MD5E-s283--3df747318fdcffe2df5413ef3ca539ed.mat

NYU_2/sub-0025070/ses-1/mri/iy_sub-0025070_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MV/3p/MD5E-s37245801--fc79bc883378bbc68119f117edb535a9.nii.gz/MD5E-s37245801--fc79bc883378bbc68119f117edb535a9.nii.gz

NYU_2/sub-0025070/ses-1/mri/julichbrain_sub-0025070_ses-1_run-1_T1w.csv

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NYU_2/sub-0025070/ses-1/mri/julichbrain_sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/lpba40_sub-0025070_ses-1_run-1_T1w.csv

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NYU_2/sub-0025070/ses-1/mri/lpba40_sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/m0wp1sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/m0wp2sub-0025070_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/7q/pw/MD5E-s2272778--09cb059d553e699ce8c014a0c4733fda.nii.gz/MD5E-s2272778--09cb059d553e699ce8c014a0c4733fda.nii.gz

NYU_2/sub-0025070/ses-1/mri/m0wp3sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/mori_sub-0025070_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

NYU_2/sub-0025070/ses-1/mri/mori_sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/mwp1sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/mwp2sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/mwp3sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/neuromorphometrics_sub-0025070_ses-1_run-1_T1w.csv

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NYU_2/sub-0025070/ses-1/mri/neuromorphometrics_sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/p0sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/p1sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/p2sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/p3sub-0025070_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025070/ses-1/mri/rp1sub-0025070_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025070/ses-1/mri/rp2sub-0025070_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025070/ses-1/mri/rp3sub-0025070_ses-1_run-1_T1w_affine.nii.gz

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NYU_2/sub-0025070/ses-1/mri/t_sub-0025070_ses-1_run-1_T1w_affine_reorient.mat

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NYU_2/sub-0025070/ses-1/mri/t_sub-0025070_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025070/ses-1/mri/thalamus_sub-0025070_ses-1_run-1_T1w.csv

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NYU_2/sub-0025070/ses-1/mri/thalamus_sub-0025070_ses-1_run-1_T1w.nii.gz

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