[DATALAD RUNCMD] Compute NYU_2/sub-0025050/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025050/ses-1/anat/sub-0025050_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025050/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025050/ses-1/label/catROI_sub-0025050_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5K/4q/MD5E-s57966--9e24898ceac454d05b0e71fd5de55c9c.mat/MD5E-s57966--9e24898ceac454d05b0e71fd5de55c9c.mat

NYU_2/sub-0025050/ses-1/label/catROI_sub-0025050_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fv/pj/MD5E-s188686--97ad73323f7bc9a348a5f8fc6f9da2f2.xml/MD5E-s188686--97ad73323f7bc9a348a5f8fc6f9da2f2.xml

NYU_2/sub-0025050/ses-1/label/catROI_sub-0025050_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/qQ/MD5E-s57966--f33f23645385e1de82b1fb0a9291ff31.mat/MD5E-s57966--f33f23645385e1de82b1fb0a9291ff31.mat

NYU_2/sub-0025050/ses-1/label/catROI_sub-0025050_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fV/77/MD5E-s188704--29ce307d9bbe128800526f07ef917c00.xml/MD5E-s188704--29ce307d9bbe128800526f07ef917c00.xml

NYU_2/sub-0025050/ses-1/label/catROIs_sub-0025050_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/jM/wW/MD5E-s119985--d55dc7d7c553373460a7527df71782e9.mat/MD5E-s119985--d55dc7d7c553373460a7527df71782e9.mat

NYU_2/sub-0025050/ses-1/label/catROIs_sub-0025050_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1P/zm/MD5E-s332141--d5ca30ed866e099a1f1173109869cc4e.xml/MD5E-s332141--d5ca30ed866e099a1f1173109869cc4e.xml

NYU_2/sub-0025050/ses-1/label/catROIs_sub-0025050_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4g/x7/MD5E-s120038--1d83673873b7e39ba3162f94041db81f.mat/MD5E-s120038--1d83673873b7e39ba3162f94041db81f.mat

NYU_2/sub-0025050/ses-1/label/catROIs_sub-0025050_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/vf/MD5E-s332130--cc9fddbf1fc35f10d8f2822ec363a157.xml/MD5E-s332130--cc9fddbf1fc35f10d8f2822ec363a157.xml

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/M5/3X/MD5E-s160144--fa15b3028fcc8b3e4574b6ee8eeb6be3.nii.gz/MD5E-s160144--fa15b3028fcc8b3e4574b6ee8eeb6be3.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K3/vJ/MD5E-s160565--5c25424e7e63830b925758e1d6df69b1.nii.gz/MD5E-s160565--5c25424e7e63830b925758e1d6df69b1.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/PW/vZ/MD5E-s179280--7c239523573397961dc880e8f90726ab.nii.gz/MD5E-s179280--7c239523573397961dc880e8f90726ab.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1g/w1/MD5E-s179819--f860821cd136bdda990a0ab602d3191c.nii.gz/MD5E-s179819--f860821cd136bdda990a0ab602d3191c.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/29/MD5E-s241046--e2ba4cd887ea9b5dc0ead38ea469c1db.nii.gz/MD5E-s241046--e2ba4cd887ea9b5dc0ead38ea469c1db.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/w8/44/MD5E-s268409--4a36c1fcb6260bfcbd02ce44748ff1aa.nii.gz/MD5E-s268409--4a36c1fcb6260bfcbd02ce44748ff1aa.nii.gz

NYU_2/sub-0025050/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/54/0Z/MD5E-s269602--5d3ce25b8bef9b3f9099ab0a3bfec9c1.nii.gz/MD5E-s269602--5d3ce25b8bef9b3f9099ab0a3bfec9c1.nii.gz

NYU_2/sub-0025050/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/Xj/MD5E-s20220--1d517cae0b11cd13c5d268bbd8f1ab39.nii.gz/MD5E-s20220--1d517cae0b11cd13c5d268bbd8f1ab39.nii.gz

NYU_2/sub-0025050/ses-1/mri/aal3_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1j/1Z/MD5E-s181159--2c84ea89bd3ebc3ee839d55f68a2af08.nii.gz/MD5E-s181159--2c84ea89bd3ebc3ee839d55f68a2af08.nii.gz

NYU_2/sub-0025050/ses-1/mri/aal3_sub-0025050_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025050/ses-1/mri/anatomy3_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/q0/Gg/MD5E-s128669--ee18ae621c7ff4e07524d4bfef875c3e.nii.gz/MD5E-s128669--ee18ae621c7ff4e07524d4bfef875c3e.nii.gz

NYU_2/sub-0025050/ses-1/mri/anatomy3_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/anon_misub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/anon_misub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/anon_msub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/anon_msub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/cat_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/92/PP/MD5E-s96356--38ec92118594d8f3f22ea202bf931a68.nii.gz/MD5E-s96356--38ec92118594d8f3f22ea202bf931a68.nii.gz

NYU_2/sub-0025050/ses-1/mri/cat_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/cobra_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/cobra_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/hammers_sub-0025050_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/hammers_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/ibsr_sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/ibsr_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/it_sub-0025050_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/it_sub-0025050_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025050/ses-1/mri/it_sub-0025050_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025050/ses-1/mri/it_sub-0025050_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025050/ses-1/mri/iy_sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/iy_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/julichbrain_sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/julichbrain_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/lpba40_sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/lpba40_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp1sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp1sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp2sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp2sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp3sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/m0wp3sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/mori_sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/mori_sub-0025050_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/mwp1sub-0025050_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025050/ses-1/mri/mwp1sub-0025050_ses-1_run-2_T1w.nii.gz

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