[DATALAD RUNCMD] Compute IPCAS_7/sub-0026053/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_7/sub-0026053/ses-1/anat/sub-0026053_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_7/sub-0026053/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_7/sub-0026053/ses-1/label/catROI_sub-0026053_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M6/JQ/MD5E-s61377--d852168bbf37ac142cab2d4fc349fc39.mat/MD5E-s61377--d852168bbf37ac142cab2d4fc349fc39.mat

IPCAS_7/sub-0026053/ses-1/label/catROI_sub-0026053_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jv/vz/MD5E-s189219--b869af982b1c9df61c76a14eb9929a5d.xml/MD5E-s189219--b869af982b1c9df61c76a14eb9929a5d.xml

IPCAS_7/sub-0026053/ses-1/label/catROIs_sub-0026053_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/2Z/MD5E-s120109--2fccb69bff93735bb838e5d85600d1e9.mat/MD5E-s120109--2fccb69bff93735bb838e5d85600d1e9.mat

IPCAS_7/sub-0026053/ses-1/label/catROIs_sub-0026053_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J6/ww/MD5E-s332036--1d4e19271a6e00abc3991bf373b4be92.xml/MD5E-s332036--1d4e19271a6e00abc3991bf373b4be92.xml

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X5/9M/MD5E-s155413--fb0b5bfc32ae72ae30c9aa2db9009744.nii.gz/MD5E-s155413--fb0b5bfc32ae72ae30c9aa2db9009744.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9x/m3/MD5E-s235703--572ee9a46a034c1c895645094fbd7eb3.nii.gz/MD5E-s235703--572ee9a46a034c1c895645094fbd7eb3.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_7/sub-0026053/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/Wm/MD5E-s263190--ff88a775957a775c61146b279b039bd9.nii.gz/MD5E-s263190--ff88a775957a775c61146b279b039bd9.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_7/sub-0026053/ses-1/mri/Tian_Subcortex_S2_7T_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fj/3g/MD5E-s24053--0bda6ddf833270df3fb3f472ce0021bc.nii.gz/MD5E-s24053--0bda6ddf833270df3fb3f472ce0021bc.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/aal3_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IPCAS_7/sub-0026053/ses-1/mri/aal3_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_7/sub-0026053/ses-1/mri/anatomy3_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IPCAS_7/sub-0026053/ses-1/mri/anatomy3_sub-0026053_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5z/Vz/MD5E-s128099--931a115844dfc0bf0676baf8c035d3c5.nii.gz/MD5E-s128099--931a115844dfc0bf0676baf8c035d3c5.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/anon_misub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/anon_msub-0026053_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/ZZ/z1/MD5E-s10440127--ec21006dc52c436abb5087c897406e71.nii.gz/MD5E-s10440127--ec21006dc52c436abb5087c897406e71.nii.gz

IPCAS_7/sub-0026053/ses-1/mri/cat_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/cobra_sub-0026053_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_7/sub-0026053/ses-1/mri/cobra_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/hammers_sub-0026053_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IPCAS_7/sub-0026053/ses-1/mri/hammers_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/ibsr_sub-0026053_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_7/sub-0026053/ses-1/mri/ibsr_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/it_sub-0026053_ses-1_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/5m/Gz/MD5E-s282--5abcdd0aca9a4c90772074e3a233b27c.mat/MD5E-s282--5abcdd0aca9a4c90772074e3a233b27c.mat

IPCAS_7/sub-0026053/ses-1/mri/it_sub-0026053_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026053/ses-1/mri/iy_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/julichbrain_sub-0026053_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026053/ses-1/mri/julichbrain_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/lpba40_sub-0026053_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026053/ses-1/mri/lpba40_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/m0wp1sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/m0wp2sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/m0wp3sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/mori_sub-0026053_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026053/ses-1/mri/mori_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/mwp1sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/mwp2sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/mwp3sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/neuromorphometrics_sub-0026053_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026053/ses-1/mri/neuromorphometrics_sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/p0sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/p1sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/p2sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/p3sub-0026053_ses-1_run-1_T1w.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/rp1sub-0026053_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/rp2sub-0026053_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/rp3sub-0026053_ses-1_run-1_T1w_affine.nii.gz

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IPCAS_7/sub-0026053/ses-1/mri/t_sub-0026053_ses-1_run-1_T1w_affine_reorient.mat

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IPCAS_7/sub-0026053/ses-1/mri/t_sub-0026053_ses-1_run-1_T1w_rigid_reorient.mat

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IPCAS_7/sub-0026053/ses-1/mri/thalamus_sub-0026053_ses-1_run-1_T1w.csv

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IPCAS_7/sub-0026053/ses-1/mri/thalamus_sub-0026053_ses-1_run-1_T1w.nii.gz

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