[DATALAD RUNCMD] Compute IACAS/sub-0025459/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025459/ses-1/anat/sub-0025459_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025459/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025459/ses-1/label/catROI_sub-0025459_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fx/Qj/MD5E-s57684--68c9b516d38828a43ec4ae9ea44e6045.mat/MD5E-s57684--68c9b516d38828a43ec4ae9ea44e6045.mat

IACAS/sub-0025459/ses-1/label/catROI_sub-0025459_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1W/Z7/MD5E-s189107--e8ede279be4f25e693a7f19dcd81e51d.xml/MD5E-s189107--e8ede279be4f25e693a7f19dcd81e51d.xml

IACAS/sub-0025459/ses-1/label/catROIs_sub-0025459_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m4/90/MD5E-s120352--2969955bfa930f1c30ec1b7dee50375e.mat/MD5E-s120352--2969955bfa930f1c30ec1b7dee50375e.mat

IACAS/sub-0025459/ses-1/label/catROIs_sub-0025459_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/pQ/MD5E-s332155--f5e48facd2cd20c92847f8668958fa54.xml/MD5E-s332155--f5e48facd2cd20c92847f8668958fa54.xml

IACAS/sub-0025459/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025459/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G5/83/MD5E-s159489--b0bd44107552c7de98bd468c1c09b0e1.nii.gz/MD5E-s159489--b0bd44107552c7de98bd468c1c09b0e1.nii.gz

IACAS/sub-0025459/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025459/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/qQ/MD5E-s176681--0169090a8418e24072fc74d2207be7ba.nii.gz/MD5E-s176681--0169090a8418e24072fc74d2207be7ba.nii.gz

IACAS/sub-0025459/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025459/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6k/VQ/MD5E-s238821--3dcde1f1b2936e12b37cc7a2851dadb4.nii.gz/MD5E-s238821--3dcde1f1b2936e12b37cc7a2851dadb4.nii.gz

IACAS/sub-0025459/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025459/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gP/5V/MD5E-s263557--0d361007995c9ff3e55bdd1577480b5e.nii.gz/MD5E-s263557--0d361007995c9ff3e55bdd1577480b5e.nii.gz

IACAS/sub-0025459/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025459/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/V0/MD5E-s26491--4823f251e26f8816c3022d3e470a3388.nii.gz/MD5E-s26491--4823f251e26f8816c3022d3e470a3388.nii.gz

IACAS/sub-0025459/ses-1/mri/aal3_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025459/ses-1/mri/aal3_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zv/07/MD5E-s179171--767753d33645689b74bb12f2a8a5c9f1.nii.gz/MD5E-s179171--767753d33645689b74bb12f2a8a5c9f1.nii.gz

IACAS/sub-0025459/ses-1/mri/anatomy3_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025459/ses-1/mri/anatomy3_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/jv/MD5E-s129432--12e492c2ec03efb1d56b917b0148670c.nii.gz/MD5E-s129432--12e492c2ec03efb1d56b917b0148670c.nii.gz

IACAS/sub-0025459/ses-1/mri/anon_misub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/8w/MD5E-s9426090--398800fa450c4721a3b7b8a5c5543e5c.nii.gz/MD5E-s9426090--398800fa450c4721a3b7b8a5c5543e5c.nii.gz

IACAS/sub-0025459/ses-1/mri/anon_msub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zf/42/MD5E-s10905702--d5fb204d78535cd46aa1c3d3a501f60c.nii.gz/MD5E-s10905702--d5fb204d78535cd46aa1c3d3a501f60c.nii.gz

IACAS/sub-0025459/ses-1/mri/cat_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kp/0M/MD5E-s108506--fff37c6c1b99f0586ace60c784e8c005.nii.gz/MD5E-s108506--fff37c6c1b99f0586ace60c784e8c005.nii.gz

IACAS/sub-0025459/ses-1/mri/cobra_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025459/ses-1/mri/cobra_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pP/Pz/MD5E-s48355--0f4ccc10772cee57138925e35fc53aec.nii.gz/MD5E-s48355--0f4ccc10772cee57138925e35fc53aec.nii.gz

IACAS/sub-0025459/ses-1/mri/hammers_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025459/ses-1/mri/hammers_sub-0025459_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/pg/27/MD5E-s145052--1d6e9b1a764b9447f4b2675a529bb77e.nii.gz/MD5E-s145052--1d6e9b1a764b9447f4b2675a529bb77e.nii.gz

IACAS/sub-0025459/ses-1/mri/ibsr_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025459/ses-1/mri/ibsr_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5g/j6/MD5E-s152002--4ac24223cd45943d0dee8ed43d7b20fc.nii.gz/MD5E-s152002--4ac24223cd45943d0dee8ed43d7b20fc.nii.gz

IACAS/sub-0025459/ses-1/mri/it_sub-0025459_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/9v/MD5E-s281--b547f4bceb4efb68381a06c3e9f69eb2.mat/MD5E-s281--b547f4bceb4efb68381a06c3e9f69eb2.mat

IACAS/sub-0025459/ses-1/mri/it_sub-0025459_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m7/Mq/MD5E-s283--40fd738555e5d2d9a88fc0a247c87bac.mat/MD5E-s283--40fd738555e5d2d9a88fc0a247c87bac.mat

IACAS/sub-0025459/ses-1/mri/iy_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xv/WV/MD5E-s44139174--7a703be1281427ebef6029d6006fdaad.nii.gz/MD5E-s44139174--7a703be1281427ebef6029d6006fdaad.nii.gz

IACAS/sub-0025459/ses-1/mri/julichbrain_sub-0025459_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025459/ses-1/mri/julichbrain_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pF/9k/MD5E-s189969--c79669bedbeb9e3feaf8631c2246c803.nii.gz/MD5E-s189969--c79669bedbeb9e3feaf8631c2246c803.nii.gz

IACAS/sub-0025459/ses-1/mri/lpba40_sub-0025459_ses-1_run-1_T1w.csv

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IACAS/sub-0025459/ses-1/mri/lpba40_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/W9/z8/MD5E-s140271--a29bc413869a2219c36b6c3feb5c5001.nii.gz/MD5E-s140271--a29bc413869a2219c36b6c3feb5c5001.nii.gz

IACAS/sub-0025459/ses-1/mri/m0wp1sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/m0wp2sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/kq/MD5E-s2385244--d8ca3d43e71c268ac51f41cc2cbb9ec3.nii.gz/MD5E-s2385244--d8ca3d43e71c268ac51f41cc2cbb9ec3.nii.gz

IACAS/sub-0025459/ses-1/mri/m0wp3sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/mori_sub-0025459_ses-1_run-1_T1w.csv

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IACAS/sub-0025459/ses-1/mri/mori_sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/mwp1sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/mwp2sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/mwp3sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/neuromorphometrics_sub-0025459_ses-1_run-1_T1w.csv

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IACAS/sub-0025459/ses-1/mri/neuromorphometrics_sub-0025459_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025459/ses-1/mri/p0sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/p1sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/p2sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/p3sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/rp1sub-0025459_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025459/ses-1/mri/rp2sub-0025459_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025459/ses-1/mri/rp3sub-0025459_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025459/ses-1/mri/t_sub-0025459_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025459/ses-1/mri/t_sub-0025459_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025459/ses-1/mri/thalamus_sub-0025459_ses-1_run-1_T1w.csv

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IACAS/sub-0025459/ses-1/mri/thalamus_sub-0025459_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025459/ses-1/mri/wj_sub-0025459_ses-1_run-1_T1w.nii.gz

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