[DATALAD RUNCMD] Compute SWU_4/sub-0025858/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025858/ses-1/anat/sub-0025858_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025858/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025858/ses-1/label/catROI_sub-0025858_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/F7/MD5E-s57729--700e57e7d51c124a28ce184be533b556.mat/MD5E-s57729--700e57e7d51c124a28ce184be533b556.mat

SWU_4/sub-0025858/ses-1/label/catROI_sub-0025858_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Q3/vj/MD5E-s188763--ec1d331aa609474f0f6d6a3070a8b4d4.xml/MD5E-s188763--ec1d331aa609474f0f6d6a3070a8b4d4.xml

SWU_4/sub-0025858/ses-1/label/catROIs_sub-0025858_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/gp/MD5E-s119974--adbc568044d146938cd6b18535d8ba8c.mat/MD5E-s119974--adbc568044d146938cd6b18535d8ba8c.mat

SWU_4/sub-0025858/ses-1/label/catROIs_sub-0025858_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jw/jj/MD5E-s332125--2165df4ef0acc777ff83fb728b1697f9.xml/MD5E-s332125--2165df4ef0acc777ff83fb728b1697f9.xml

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q6/kk/MD5E-s161442--35df325bdc5b8984b0ec25c5a858f8ab.nii.gz/MD5E-s161442--35df325bdc5b8984b0ec25c5a858f8ab.nii.gz

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FP/GK/MD5E-s180712--2aab5f2362d147a84bec1225645c1d7b.nii.gz/MD5E-s180712--2aab5f2362d147a84bec1225645c1d7b.nii.gz

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fz/2V/MD5E-s243471--2e55b53880742c4edc820b3296a0d188.nii.gz/MD5E-s243471--2e55b53880742c4edc820b3296a0d188.nii.gz

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025858/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6M/89/MD5E-s270958--6619433557659135f14680e0cded8f0b.nii.gz/MD5E-s270958--6619433557659135f14680e0cded8f0b.nii.gz

SWU_4/sub-0025858/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025858/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qK/MK/MD5E-s24094--48efaeaa59b1579db83e04cb1749d8af.nii.gz/MD5E-s24094--48efaeaa59b1579db83e04cb1749d8af.nii.gz

SWU_4/sub-0025858/ses-1/mri/aal3_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025858/ses-1/mri/aal3_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xP/PM/MD5E-s182425--2efc7e563932f3ee994aa02d38aadecb.nii.gz/MD5E-s182425--2efc7e563932f3ee994aa02d38aadecb.nii.gz

SWU_4/sub-0025858/ses-1/mri/anatomy3_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025858/ses-1/mri/anatomy3_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/2W/MD5E-s132550--8f1e4a6da06f2047bfc2174697059e5d.nii.gz/MD5E-s132550--8f1e4a6da06f2047bfc2174697059e5d.nii.gz

SWU_4/sub-0025858/ses-1/mri/anon_misub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/Mq/MD5E-s8659851--ba188708e77e2c82215e9a7c25834919.nii.gz/MD5E-s8659851--ba188708e77e2c82215e9a7c25834919.nii.gz

SWU_4/sub-0025858/ses-1/mri/anon_msub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WX/8k/MD5E-s8739409--cb474292492c85258c16df0074f4b931.nii.gz/MD5E-s8739409--cb474292492c85258c16df0074f4b931.nii.gz

SWU_4/sub-0025858/ses-1/mri/cat_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/19/42/MD5E-s97643--f1315449b31c4ab5c7140403f5450494.nii.gz/MD5E-s97643--f1315449b31c4ab5c7140403f5450494.nii.gz

SWU_4/sub-0025858/ses-1/mri/cobra_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025858/ses-1/mri/cobra_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/G0/MD5E-s46403--5e8f28fad6a0646e68309892d8bd0db8.nii.gz/MD5E-s46403--5e8f28fad6a0646e68309892d8bd0db8.nii.gz

SWU_4/sub-0025858/ses-1/mri/hammers_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025858/ses-1/mri/hammers_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0Z/3p/MD5E-s143473--f43ee3893aa15f4714bcaaf4ec056761.nii.gz/MD5E-s143473--f43ee3893aa15f4714bcaaf4ec056761.nii.gz

SWU_4/sub-0025858/ses-1/mri/ibsr_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025858/ses-1/mri/ibsr_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xx/8P/MD5E-s152073--d4d199fdce5c389a24f6adae8a7242af.nii.gz/MD5E-s152073--d4d199fdce5c389a24f6adae8a7242af.nii.gz

SWU_4/sub-0025858/ses-1/mri/it_sub-0025858_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5G/zz/MD5E-s282--0a2b64c2789ac7beb845a0ec4a31160c.mat/MD5E-s282--0a2b64c2789ac7beb845a0ec4a31160c.mat

SWU_4/sub-0025858/ses-1/mri/it_sub-0025858_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZP/Zg/MD5E-s282--7edef518e0a5062d4c28a39e02a6ba63.mat/MD5E-s282--7edef518e0a5062d4c28a39e02a6ba63.mat

SWU_4/sub-0025858/ses-1/mri/iy_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZZ/j5/MD5E-s43483889--27c8f4d62243b05a8e623b8ab8ef5379.nii.gz/MD5E-s43483889--27c8f4d62243b05a8e623b8ab8ef5379.nii.gz

SWU_4/sub-0025858/ses-1/mri/julichbrain_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025858/ses-1/mri/julichbrain_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fk/j8/MD5E-s193497--f95ffdc7311dd14e39f5cd225e50f960.nii.gz/MD5E-s193497--f95ffdc7311dd14e39f5cd225e50f960.nii.gz

SWU_4/sub-0025858/ses-1/mri/lpba40_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025858/ses-1/mri/lpba40_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/44/j8/MD5E-s140975--36fdc45aed36635cfbcdd737218d1091.nii.gz/MD5E-s140975--36fdc45aed36635cfbcdd737218d1091.nii.gz

SWU_4/sub-0025858/ses-1/mri/m0wp1sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/21/qg/MD5E-s2580523--aa5fbc3e58690f9acda47b6c3dbb69b6.nii.gz/MD5E-s2580523--aa5fbc3e58690f9acda47b6c3dbb69b6.nii.gz

SWU_4/sub-0025858/ses-1/mri/m0wp2sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0M/fV/MD5E-s2331372--5cf4f0a2136000b033c474204f284876.nii.gz/MD5E-s2331372--5cf4f0a2136000b033c474204f284876.nii.gz

SWU_4/sub-0025858/ses-1/mri/m0wp3sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/x5/MD5E-s2497446--33e78b97f6004b910cb6a00adc40bc30.nii.gz/MD5E-s2497446--33e78b97f6004b910cb6a00adc40bc30.nii.gz

SWU_4/sub-0025858/ses-1/mri/mori_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025858/ses-1/mri/mori_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/M0/MD5E-s167499--c1e1be2a825abac010d65eb46ec6fd62.nii.gz/MD5E-s167499--c1e1be2a825abac010d65eb46ec6fd62.nii.gz

SWU_4/sub-0025858/ses-1/mri/mwp1sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m2/wJ/MD5E-s2586317--a96c1bdf6777f4053d8259c581f6c36d.nii.gz/MD5E-s2586317--a96c1bdf6777f4053d8259c581f6c36d.nii.gz

SWU_4/sub-0025858/ses-1/mri/mwp2sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9k/pP/MD5E-s2333365--bf3f2f2e610e0a2d427aa1cfe806dd27.nii.gz/MD5E-s2333365--bf3f2f2e610e0a2d427aa1cfe806dd27.nii.gz

SWU_4/sub-0025858/ses-1/mri/mwp3sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PX/8z/MD5E-s2493679--87f9b53ff79ff1ecc590dd189a729474.nii.gz/MD5E-s2493679--87f9b53ff79ff1ecc590dd189a729474.nii.gz

SWU_4/sub-0025858/ses-1/mri/neuromorphometrics_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025858/ses-1/mri/neuromorphometrics_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gz/44/MD5E-s194051--5dd08e71da66fce9230d1ce09cd7c328.nii.gz/MD5E-s194051--5dd08e71da66fce9230d1ce09cd7c328.nii.gz

SWU_4/sub-0025858/ses-1/mri/p0sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/09/9x/MD5E-s612307--d81ec9560e1e32b09894edd8dc95ea46.nii.gz/MD5E-s612307--d81ec9560e1e32b09894edd8dc95ea46.nii.gz

SWU_4/sub-0025858/ses-1/mri/p1sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/0P/MD5E-s651285--80550443ef4be2adbd117eefdf894f8c.nii.gz/MD5E-s651285--80550443ef4be2adbd117eefdf894f8c.nii.gz

SWU_4/sub-0025858/ses-1/mri/p2sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v4/Q4/MD5E-s433766--f0d3c566667c537dc829f52333d0c34e.nii.gz/MD5E-s433766--f0d3c566667c537dc829f52333d0c34e.nii.gz

SWU_4/sub-0025858/ses-1/mri/p3sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mV/vW/MD5E-s361073--45798359f0dba475b1c142415b8b20a2.nii.gz/MD5E-s361073--45798359f0dba475b1c142415b8b20a2.nii.gz

SWU_4/sub-0025858/ses-1/mri/rp1sub-0025858_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q1/1g/MD5E-s460387--bc6fad406b24e962a5ebd7cf6c2253d8.nii.gz/MD5E-s460387--bc6fad406b24e962a5ebd7cf6c2253d8.nii.gz

SWU_4/sub-0025858/ses-1/mri/rp2sub-0025858_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025858/ses-1/mri/rp3sub-0025858_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F6/Q6/MD5E-s284706--c6524d218c8e61be3bbf9a5512f6be12.nii.gz/MD5E-s284706--c6524d218c8e61be3bbf9a5512f6be12.nii.gz

SWU_4/sub-0025858/ses-1/mri/t_sub-0025858_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/vg/MD5E-s283--9440e0106913e349dc9182bcce3b68ce.mat/MD5E-s283--9440e0106913e349dc9182bcce3b68ce.mat

SWU_4/sub-0025858/ses-1/mri/t_sub-0025858_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zg/Mw/MD5E-s283--7a869f64d7b9b0d351e390f3642f816e.mat/MD5E-s283--7a869f64d7b9b0d351e390f3642f816e.mat

SWU_4/sub-0025858/ses-1/mri/thalamus_sub-0025858_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025858/ses-1/mri/thalamus_sub-0025858_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/39/zk/MD5E-s15857--4be64b56aecdef0add8bc6fc27194648.nii.gz/MD5E-s15857--4be64b56aecdef0add8bc6fc27194648.nii.gz

SWU_4/sub-0025858/ses-1/mri/wj_sub-0025858_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025858/ses-1/surf/lh.central.sub-0025858_ses-1_run-1_T1w.gii

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SWU_4/sub-0025858/ses-1/surf/lh.edgemap32k.sub-0025858_ses-1_run-1_T1w.mat

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SWU_4/sub-0025858/ses-1/surf/lh.fractaldimension.sub-0025858_ses-1_run-1_T1w

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SWU_4/sub-0025858/ses-1/surf/lh.gmv.sub-0025858_ses-1_run-1_T1w

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SWU_4/sub-0025858/ses-1/surf/lh.toroGI20mm.sub-0025858_ses-1_run-1_T1w

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SWU_4/sub-0025858/ses-1/surf/rh.edgemap32k.sub-0025858_ses-1_run-1_T1w.mat

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SWU_4/sub-0025858/ses-1/surf/rh.gmv.sub-0025858_ses-1_run-1_T1w

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