[DATALAD RUNCMD] Compute BNU_2/sub-0025954/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_2/sub-0025954/ses-1/anat/sub-0025954_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_2/sub-0025954/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_2/sub-0025954/ses-1/label/catROI_sub-0025954_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wK/p2/MD5E-s61308--2f5be34d96709012f2c25a808cb542c7.mat/MD5E-s61308--2f5be34d96709012f2c25a808cb542c7.mat

BNU_2/sub-0025954/ses-1/label/catROI_sub-0025954_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/1k/MD5E-s188934--d66f699e37bae30142be111184ddde51.xml/MD5E-s188934--d66f699e37bae30142be111184ddde51.xml

BNU_2/sub-0025954/ses-1/label/catROIs_sub-0025954_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JM/MK/MD5E-s120114--89959d12de8694de71a171f97154dd25.mat/MD5E-s120114--89959d12de8694de71a171f97154dd25.mat

BNU_2/sub-0025954/ses-1/label/catROIs_sub-0025954_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z0/MM/MD5E-s332068--ab1eaa070c07dd1cab21fa7cf743e3fe.xml/MD5E-s332068--ab1eaa070c07dd1cab21fa7cf743e3fe.xml

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/08/WX/MD5E-s149281--bf1f59a7bde51c3bffbf879ea270c15d.nii.gz/MD5E-s149281--bf1f59a7bde51c3bffbf879ea270c15d.nii.gz

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/zk/MD5E-s165160--a0a349032dbc094293f5c267d6ea599a.nii.gz/MD5E-s165160--a0a349032dbc094293f5c267d6ea599a.nii.gz

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ww/vg/MD5E-s222544--c46b7ac389c966325c43f0597e69e663.nii.gz/MD5E-s222544--c46b7ac389c966325c43f0597e69e663.nii.gz

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_2/sub-0025954/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gV/WM/MD5E-s245660--9e895a46cdad42d2deffdb3d62a21270.nii.gz/MD5E-s245660--9e895a46cdad42d2deffdb3d62a21270.nii.gz

BNU_2/sub-0025954/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_2/sub-0025954/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/7p/MD5E-s19402--aff4f9a0b4b1c392b4c03d057e2998cb.nii.gz/MD5E-s19402--aff4f9a0b4b1c392b4c03d057e2998cb.nii.gz

BNU_2/sub-0025954/ses-1/mri/aal3_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_2/sub-0025954/ses-1/mri/aal3_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G6/G7/MD5E-s165588--909d67bb115fafa4a9f99301d863790b.nii.gz/MD5E-s165588--909d67bb115fafa4a9f99301d863790b.nii.gz

BNU_2/sub-0025954/ses-1/mri/anatomy3_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_2/sub-0025954/ses-1/mri/anatomy3_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pg/4x/MD5E-s118749--7aa5c085b62ff0723574aa7d86d80d15.nii.gz/MD5E-s118749--7aa5c085b62ff0723574aa7d86d80d15.nii.gz

BNU_2/sub-0025954/ses-1/mri/anon_misub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X9/vf/MD5E-s3798520--a1e3f5a46fd343f9ce8c569426575c44.nii.gz/MD5E-s3798520--a1e3f5a46fd343f9ce8c569426575c44.nii.gz

BNU_2/sub-0025954/ses-1/mri/anon_msub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pz/0f/MD5E-s7304808--1f743e5d0c9abdc9721a33b7584eb0f6.nii.gz/MD5E-s7304808--1f743e5d0c9abdc9721a33b7584eb0f6.nii.gz

BNU_2/sub-0025954/ses-1/mri/cat_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kg/Px/MD5E-s88145--b2f02b7da817900eb1935b1d493fb39a.nii.gz/MD5E-s88145--b2f02b7da817900eb1935b1d493fb39a.nii.gz

BNU_2/sub-0025954/ses-1/mri/cobra_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_2/sub-0025954/ses-1/mri/cobra_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z7/qv/MD5E-s40870--1534f31e168de77acd63a2489c7ac754.nii.gz/MD5E-s40870--1534f31e168de77acd63a2489c7ac754.nii.gz

BNU_2/sub-0025954/ses-1/mri/hammers_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_2/sub-0025954/ses-1/mri/hammers_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z0/mx/MD5E-s131688--9292756536acdfb6e8e30dd52566890e.nii.gz/MD5E-s131688--9292756536acdfb6e8e30dd52566890e.nii.gz

BNU_2/sub-0025954/ses-1/mri/ibsr_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_2/sub-0025954/ses-1/mri/ibsr_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F9/5x/MD5E-s138637--8b56ab0d01a7d6fc730770fb43073b7c.nii.gz/MD5E-s138637--8b56ab0d01a7d6fc730770fb43073b7c.nii.gz

BNU_2/sub-0025954/ses-1/mri/it_sub-0025954_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q2/fk/MD5E-s284--e1b6d7a71cdecfd5bfb54f3a183c7e15.mat/MD5E-s284--e1b6d7a71cdecfd5bfb54f3a183c7e15.mat

BNU_2/sub-0025954/ses-1/mri/it_sub-0025954_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3p/WM/MD5E-s283--67f91f2c9b2696c51dc7ec8f642ce28d.mat/MD5E-s283--67f91f2c9b2696c51dc7ec8f642ce28d.mat

BNU_2/sub-0025954/ses-1/mri/iy_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/51/GG/MD5E-s34986051--a67a44865c6f36a2ad689b157a3078e2.nii.gz/MD5E-s34986051--a67a44865c6f36a2ad689b157a3078e2.nii.gz

BNU_2/sub-0025954/ses-1/mri/julichbrain_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_2/sub-0025954/ses-1/mri/julichbrain_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4M/wG/MD5E-s176929--4e6d5dd60a176378ef10b0995d952fc5.nii.gz/MD5E-s176929--4e6d5dd60a176378ef10b0995d952fc5.nii.gz

BNU_2/sub-0025954/ses-1/mri/lpba40_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_2/sub-0025954/ses-1/mri/lpba40_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/46/MD5E-s129479--02695d491e48b0bd1dd0274306b28038.nii.gz/MD5E-s129479--02695d491e48b0bd1dd0274306b28038.nii.gz

BNU_2/sub-0025954/ses-1/mri/m0wp1sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pv/K0/MD5E-s2586102--28f54d29af722fa6adc449dc8546c208.nii.gz/MD5E-s2586102--28f54d29af722fa6adc449dc8546c208.nii.gz

BNU_2/sub-0025954/ses-1/mri/m0wp2sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7k/4z/MD5E-s2267178--f9b20a0e2a33fd79136ce79defc2c3e5.nii.gz/MD5E-s2267178--f9b20a0e2a33fd79136ce79defc2c3e5.nii.gz

BNU_2/sub-0025954/ses-1/mri/m0wp3sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/JZ/zk/MD5E-s2451083--e9ae5a65b177f4401cd9f767ad286e75.nii.gz/MD5E-s2451083--e9ae5a65b177f4401cd9f767ad286e75.nii.gz

BNU_2/sub-0025954/ses-1/mri/mori_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

BNU_2/sub-0025954/ses-1/mri/mori_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5Z/1Z/MD5E-s154099--297121f67959e973bae707360a3d1936.nii.gz/MD5E-s154099--297121f67959e973bae707360a3d1936.nii.gz

BNU_2/sub-0025954/ses-1/mri/mwp1sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k5/pf/MD5E-s2588343--a11d94959144e893604577909f974893.nii.gz/MD5E-s2588343--a11d94959144e893604577909f974893.nii.gz

BNU_2/sub-0025954/ses-1/mri/mwp2sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wZ/5j/MD5E-s2265616--f42e59121102a044080c4f33970b75e4.nii.gz/MD5E-s2265616--f42e59121102a044080c4f33970b75e4.nii.gz

BNU_2/sub-0025954/ses-1/mri/mwp3sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qv/Vw/MD5E-s2449223--87703e6b74ccfd52e09e4513cc59bf43.nii.gz/MD5E-s2449223--87703e6b74ccfd52e09e4513cc59bf43.nii.gz

BNU_2/sub-0025954/ses-1/mri/neuromorphometrics_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

BNU_2/sub-0025954/ses-1/mri/neuromorphometrics_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/84/J7/MD5E-s181196--39c34d889b0596ffad7ba74f36982880.nii.gz/MD5E-s181196--39c34d889b0596ffad7ba74f36982880.nii.gz

BNU_2/sub-0025954/ses-1/mri/p0sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Zq/46/MD5E-s745271--a659d9bd00abeea9ab0191afbf67856a.nii.gz/MD5E-s745271--a659d9bd00abeea9ab0191afbf67856a.nii.gz

BNU_2/sub-0025954/ses-1/mri/p1sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/10/Zf/MD5E-s764718--a0e70a20415c711ac3ddc7680720e996.nii.gz/MD5E-s764718--a0e70a20415c711ac3ddc7680720e996.nii.gz

BNU_2/sub-0025954/ses-1/mri/p2sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vj/w7/MD5E-s511048--dd281eab1b1bf7f199481e910b642ce4.nii.gz/MD5E-s511048--dd281eab1b1bf7f199481e910b642ce4.nii.gz

BNU_2/sub-0025954/ses-1/mri/p3sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/Wg/MD5E-s460233--534178c9fd71e86f842ded0fbbbf091a.nii.gz/MD5E-s460233--534178c9fd71e86f842ded0fbbbf091a.nii.gz

BNU_2/sub-0025954/ses-1/mri/rp1sub-0025954_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F0/Jz/MD5E-s444791--35bae74a375767ed3dbf545272378cc5.nii.gz/MD5E-s444791--35bae74a375767ed3dbf545272378cc5.nii.gz

BNU_2/sub-0025954/ses-1/mri/rp2sub-0025954_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025954/ses-1/mri/rp3sub-0025954_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P4/29/MD5E-s270057--20cf0b00277f61e544b070906936ae75.nii.gz/MD5E-s270057--20cf0b00277f61e544b070906936ae75.nii.gz

BNU_2/sub-0025954/ses-1/mri/t_sub-0025954_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kk/KV/MD5E-s284--728fa74236ed49659fd7c7afcc912ab2.mat/MD5E-s284--728fa74236ed49659fd7c7afcc912ab2.mat

BNU_2/sub-0025954/ses-1/mri/t_sub-0025954_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pp/mm/MD5E-s282--f970083e11d6e06b899eb0ea420794f8.mat/MD5E-s282--f970083e11d6e06b899eb0ea420794f8.mat

BNU_2/sub-0025954/ses-1/mri/thalamus_sub-0025954_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

BNU_2/sub-0025954/ses-1/mri/thalamus_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/Vq/MD5E-s12511--75d85961df652f825cf0be04befa45d7.nii.gz/MD5E-s12511--75d85961df652f825cf0be04befa45d7.nii.gz

BNU_2/sub-0025954/ses-1/mri/wj_sub-0025954_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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BNU_2/sub-0025954/ses-1/mri/wmisub-0025954_ses-1_run-1_T1w.nii.gz

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