[DATALAD RUNCMD] Compute MRN/sub-0027415/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/MRN/sub-0027415/ses-1/anat/sub-0027415_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "MRN/sub-0027415/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

MRN/sub-0027415/ses-1/label/catROI_sub-0027415_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mg/28/MD5E-s61326--083bf846c4c8e440073abb25272a952d.mat/MD5E-s61326--083bf846c4c8e440073abb25272a952d.mat

MRN/sub-0027415/ses-1/label/catROI_sub-0027415_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3p/67/MD5E-s188766--f325d91873c00458e4e4608537d3ee08.xml/MD5E-s188766--f325d91873c00458e4e4608537d3ee08.xml

MRN/sub-0027415/ses-1/label/catROIs_sub-0027415_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/J5/MD5E-s120020--bd9ca500cc7d152f559543e852faf1fe.mat/MD5E-s120020--bd9ca500cc7d152f559543e852faf1fe.mat

MRN/sub-0027415/ses-1/label/catROIs_sub-0027415_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jj/G9/MD5E-s332202--b1775e2d7dfade30a70bf533d1a15fe9.xml/MD5E-s332202--b1775e2d7dfade30a70bf533d1a15fe9.xml

MRN/sub-0027415/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

MRN/sub-0027415/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MJ/j9/MD5E-s191826--b57445cd71c0ab54c65c31206533aa7b.nii.gz/MD5E-s191826--b57445cd71c0ab54c65c31206533aa7b.nii.gz

MRN/sub-0027415/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

MRN/sub-0027415/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GJ/0W/MD5E-s214637--1e7af20b18f2650223aa05bab32f727e.nii.gz/MD5E-s214637--1e7af20b18f2650223aa05bab32f727e.nii.gz

MRN/sub-0027415/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

MRN/sub-0027415/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mm/8m/MD5E-s284930--15f42ac728e425ac1d91c506ee011d5b.nii.gz/MD5E-s284930--15f42ac728e425ac1d91c506ee011d5b.nii.gz

MRN/sub-0027415/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

MRN/sub-0027415/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z9/9K/MD5E-s317365--4fda46bc171f200311218fc4968d320b.nii.gz/MD5E-s317365--4fda46bc171f200311218fc4968d320b.nii.gz

MRN/sub-0027415/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

MRN/sub-0027415/ses-1/mri/Tian_Subcortex_S2_7T_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2w/v0/MD5E-s27248--901d42271fe97c8267c54128984402c6.nii.gz/MD5E-s27248--901d42271fe97c8267c54128984402c6.nii.gz

MRN/sub-0027415/ses-1/mri/aal3_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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MRN/sub-0027415/ses-1/mri/aal3_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027415/ses-1/mri/anatomy3_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

MRN/sub-0027415/ses-1/mri/anatomy3_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/jM/MD5E-s156999--11c7f6b90859398c7d5255b274751b98.nii.gz/MD5E-s156999--11c7f6b90859398c7d5255b274751b98.nii.gz

MRN/sub-0027415/ses-1/mri/anon_misub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gf/gp/MD5E-s10295506--99687cf6bcec137380c1b5fc4605d74f.nii.gz/MD5E-s10295506--99687cf6bcec137380c1b5fc4605d74f.nii.gz

MRN/sub-0027415/ses-1/mri/anon_msub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9X/18/MD5E-s11321626--77495397e546f7ae4bbc6aa2b3faf801.nii.gz/MD5E-s11321626--77495397e546f7ae4bbc6aa2b3faf801.nii.gz

MRN/sub-0027415/ses-1/mri/cat_sub-0027415_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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MRN/sub-0027415/ses-1/mri/cobra_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

MRN/sub-0027415/ses-1/mri/cobra_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/hammers_sub-0027415_ses-1_run-1_T1w.csv

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+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

MRN/sub-0027415/ses-1/mri/hammers_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/ibsr_sub-0027415_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

MRN/sub-0027415/ses-1/mri/ibsr_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/it_sub-0027415_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mx/pQ/MD5E-s284--dca85e98b339f922625d09df9238a317.mat/MD5E-s284--dca85e98b339f922625d09df9238a317.mat

MRN/sub-0027415/ses-1/mri/it_sub-0027415_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027415/ses-1/mri/iy_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/julichbrain_sub-0027415_ses-1_run-1_T1w.csv

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MRN/sub-0027415/ses-1/mri/julichbrain_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/lpba40_sub-0027415_ses-1_run-1_T1w.csv

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MRN/sub-0027415/ses-1/mri/lpba40_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/m0wp1sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/m0wp2sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/m0wp3sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/mori_sub-0027415_ses-1_run-1_T1w.csv

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MRN/sub-0027415/ses-1/mri/mori_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/mwp1sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/mwp2sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/mwp3sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/neuromorphometrics_sub-0027415_ses-1_run-1_T1w.csv

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MRN/sub-0027415/ses-1/mri/neuromorphometrics_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/p0sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/p1sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/p2sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/p3sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/rp1sub-0027415_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027415/ses-1/mri/rp2sub-0027415_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027415/ses-1/mri/rp3sub-0027415_ses-1_run-1_T1w_affine.nii.gz

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MRN/sub-0027415/ses-1/mri/t_sub-0027415_ses-1_run-1_T1w_affine_reorient.mat

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MRN/sub-0027415/ses-1/mri/t_sub-0027415_ses-1_run-1_T1w_rigid_reorient.mat

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MRN/sub-0027415/ses-1/mri/thalamus_sub-0027415_ses-1_run-1_T1w.csv

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MRN/sub-0027415/ses-1/mri/thalamus_sub-0027415_ses-1_run-1_T1w.nii.gz

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MRN/sub-0027415/ses-1/mri/wj_sub-0027415_ses-1_run-1_T1w.nii.gz

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