[DATALAD RUNCMD] Compute LMU_1/sub-0025348/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/LMU_1/sub-0025348/ses-1/anat/sub-0025348_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "LMU_1/sub-0025348/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

LMU_1/sub-0025348/ses-1/label/catROI_sub-0025348_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mj/f1/MD5E-s57745--e4b259b84156e3bfb5e196e6217d1904.mat/MD5E-s57745--e4b259b84156e3bfb5e196e6217d1904.mat

LMU_1/sub-0025348/ses-1/label/catROI_sub-0025348_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/Z0/MD5E-s188962--6c8a5fea04680c48dd86d764241d1161.xml/MD5E-s188962--6c8a5fea04680c48dd86d764241d1161.xml

LMU_1/sub-0025348/ses-1/label/catROIs_sub-0025348_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/ZW/MD5E-s120042--0c361afbbf405657fcde29ec190a23d9.mat/MD5E-s120042--0c361afbbf405657fcde29ec190a23d9.mat

LMU_1/sub-0025348/ses-1/label/catROIs_sub-0025348_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/8f/MD5E-s332053--c0f9f8b8a7cab8e755aa601c0eaf0846.xml/MD5E-s332053--c0f9f8b8a7cab8e755aa601c0eaf0846.xml

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/61/8w/MD5E-s214460--b5bf770e7f8805d8c29c1396354a222e.nii.gz/MD5E-s214460--b5bf770e7f8805d8c29c1396354a222e.nii.gz

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wF/Z3/MD5E-s239779--c454dbf30e6b9eaadcf318ba99ae4a6f.nii.gz/MD5E-s239779--c454dbf30e6b9eaadcf318ba99ae4a6f.nii.gz

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5w/69/MD5E-s306707--2212c3c3ba93d448094a7c3b3056a4f3.nii.gz/MD5E-s306707--2212c3c3ba93d448094a7c3b3056a4f3.nii.gz

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

LMU_1/sub-0025348/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/Mw/MD5E-s340984--ff911278fe3ced072994c682af5b843c.nii.gz/MD5E-s340984--ff911278fe3ced072994c682af5b843c.nii.gz

LMU_1/sub-0025348/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

LMU_1/sub-0025348/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jM/9p/MD5E-s29815--8876e716e5deee484d6b2f472f1c3e58.nii.gz/MD5E-s29815--8876e716e5deee484d6b2f472f1c3e58.nii.gz

LMU_1/sub-0025348/ses-1/mri/aal3_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

LMU_1/sub-0025348/ses-1/mri/aal3_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f6/0X/MD5E-s244323--c68b3adf19d8aff54a554df1db8a1b86.nii.gz/MD5E-s244323--c68b3adf19d8aff54a554df1db8a1b86.nii.gz

LMU_1/sub-0025348/ses-1/mri/anatomy3_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

LMU_1/sub-0025348/ses-1/mri/anatomy3_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2V/Pj/MD5E-s173624--2949827d2ead2e790357a2ec1b2705d6.nii.gz/MD5E-s173624--2949827d2ead2e790357a2ec1b2705d6.nii.gz

LMU_1/sub-0025348/ses-1/mri/anon_misub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mk/mV/MD5E-s6178328--e17031c4dee2037774960f03782ca111.nii.gz/MD5E-s6178328--e17031c4dee2037774960f03782ca111.nii.gz

LMU_1/sub-0025348/ses-1/mri/anon_msub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/X0/6z/MD5E-s12783582--42221a64ebfcaf997a2b51bf99575e27.nii.gz/MD5E-s12783582--42221a64ebfcaf997a2b51bf99575e27.nii.gz

LMU_1/sub-0025348/ses-1/mri/cat_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/00/89/MD5E-s128605--af0d2736278919fdb895de5ef3a359f6.nii.gz/MD5E-s128605--af0d2736278919fdb895de5ef3a359f6.nii.gz

LMU_1/sub-0025348/ses-1/mri/cobra_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

LMU_1/sub-0025348/ses-1/mri/cobra_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0k/3P/MD5E-s62295--11907a483ec2826cbba857d7f511a484.nii.gz/MD5E-s62295--11907a483ec2826cbba857d7f511a484.nii.gz

LMU_1/sub-0025348/ses-1/mri/hammers_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

LMU_1/sub-0025348/ses-1/mri/hammers_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/zX/MD5E-s187347--ac03c9c798288ca4b478ddc5471b019a.nii.gz/MD5E-s187347--ac03c9c798288ca4b478ddc5471b019a.nii.gz

LMU_1/sub-0025348/ses-1/mri/ibsr_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

LMU_1/sub-0025348/ses-1/mri/ibsr_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qf/Zz/MD5E-s198043--df1da976287d823e3fce5fd1dc25c5b9.nii.gz/MD5E-s198043--df1da976287d823e3fce5fd1dc25c5b9.nii.gz

LMU_1/sub-0025348/ses-1/mri/it_sub-0025348_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m1/P0/MD5E-s283--a83edeea1ebe4f51099b2874e4c37c4f.mat/MD5E-s283--a83edeea1ebe4f51099b2874e4c37c4f.mat

LMU_1/sub-0025348/ses-1/mri/it_sub-0025348_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/7M/MD5E-s283--4c96bdeacbd599b0f40cfc97b99ba468.mat/MD5E-s283--4c96bdeacbd599b0f40cfc97b99ba468.mat

LMU_1/sub-0025348/ses-1/mri/iy_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vx/pw/MD5E-s56185948--396c5b5351128acec61f3125f35d06b7.nii.gz/MD5E-s56185948--396c5b5351128acec61f3125f35d06b7.nii.gz

LMU_1/sub-0025348/ses-1/mri/julichbrain_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

LMU_1/sub-0025348/ses-1/mri/julichbrain_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KF/Gj/MD5E-s253310--9a64e6b56bc98e60b37a14279e6584f9.nii.gz/MD5E-s253310--9a64e6b56bc98e60b37a14279e6584f9.nii.gz

LMU_1/sub-0025348/ses-1/mri/lpba40_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

LMU_1/sub-0025348/ses-1/mri/lpba40_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025348/ses-1/mri/m0wp1sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8V/Q7/MD5E-s2570160--e0df6835849ddb2c6b173c23ea32bbf3.nii.gz/MD5E-s2570160--e0df6835849ddb2c6b173c23ea32bbf3.nii.gz

LMU_1/sub-0025348/ses-1/mri/m0wp2sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wX/k6/MD5E-s2277956--c8e3d8b1419307288bee277fb14a48a9.nii.gz/MD5E-s2277956--c8e3d8b1419307288bee277fb14a48a9.nii.gz

LMU_1/sub-0025348/ses-1/mri/m0wp3sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/J7/Gg/MD5E-s2434580--a214161bbb76daa466c220bb02e24192.nii.gz/MD5E-s2434580--a214161bbb76daa466c220bb02e24192.nii.gz

LMU_1/sub-0025348/ses-1/mri/mori_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

LMU_1/sub-0025348/ses-1/mri/mori_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mK/K3/MD5E-s219807--64c3498170858e42d56e6992276e2531.nii.gz/MD5E-s219807--64c3498170858e42d56e6992276e2531.nii.gz

LMU_1/sub-0025348/ses-1/mri/mwp1sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4z/3k/MD5E-s2571319--39d18bce8de758ba51feed6869161a6c.nii.gz/MD5E-s2571319--39d18bce8de758ba51feed6869161a6c.nii.gz

LMU_1/sub-0025348/ses-1/mri/mwp2sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2q/Q0/MD5E-s2277362--d3bcb35bf47d512ca65be9c9562ecc0f.nii.gz/MD5E-s2277362--d3bcb35bf47d512ca65be9c9562ecc0f.nii.gz

LMU_1/sub-0025348/ses-1/mri/mwp3sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4K/vg/MD5E-s2434183--046ae421a5fffd91d43e3eb583561e4a.nii.gz/MD5E-s2434183--046ae421a5fffd91d43e3eb583561e4a.nii.gz

LMU_1/sub-0025348/ses-1/mri/neuromorphometrics_sub-0025348_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
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LMU_1/sub-0025348/ses-1/mri/neuromorphometrics_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025348/ses-1/mri/p0sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zK/2J/MD5E-s771448--b2f7c77940159328ee9a60940606a27b.nii.gz/MD5E-s771448--b2f7c77940159328ee9a60940606a27b.nii.gz

LMU_1/sub-0025348/ses-1/mri/p1sub-0025348_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025348/ses-1/mri/p2sub-0025348_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025348/ses-1/mri/p3sub-0025348_ses-1_run-1_T1w.nii.gz

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LMU_1/sub-0025348/ses-1/mri/rp1sub-0025348_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025348/ses-1/mri/rp2sub-0025348_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025348/ses-1/mri/rp3sub-0025348_ses-1_run-1_T1w_affine.nii.gz

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LMU_1/sub-0025348/ses-1/mri/t_sub-0025348_ses-1_run-1_T1w_affine_reorient.mat

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LMU_1/sub-0025348/ses-1/mri/t_sub-0025348_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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LMU_1/sub-0025348/ses-1/mri/thalamus_sub-0025348_ses-1_run-1_T1w.csv

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LMU_1/sub-0025348/ses-1/mri/thalamus_sub-0025348_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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LMU_1/sub-0025348/ses-1/mri/wj_sub-0025348_ses-1_run-1_T1w.nii.gz

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