[DATALAD RUNCMD] Compute XHCUMS/sub-0026005/ses-3

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/XHCUMS/sub-0026005/ses-3/anat/sub-0026005_ses-3_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "XHCUMS/sub-0026005/ses-3"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

XHCUMS/sub-0026005/ses-3/label/catROI_sub-0026005_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5q/16/MD5E-s61357--f50d4d62064a559d45b06ca84a069fdd.mat/MD5E-s61357--f50d4d62064a559d45b06ca84a069fdd.mat

XHCUMS/sub-0026005/ses-3/label/catROI_sub-0026005_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xW/XG/MD5E-s188733--96cb1a6070c88d74547bab5912b8b5d0.xml/MD5E-s188733--96cb1a6070c88d74547bab5912b8b5d0.xml

XHCUMS/sub-0026005/ses-3/label/catROIs_sub-0026005_ses-3_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xZ/kj/MD5E-s120179--38b7b00cdf8dbf7bfca389ce99cbb89d.mat/MD5E-s120179--38b7b00cdf8dbf7bfca389ce99cbb89d.mat

XHCUMS/sub-0026005/ses-3/label/catROIs_sub-0026005_ses-3_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j9/WW/MD5E-s332104--d2f390becea773e3747cd4cc8acf6877.xml/MD5E-s332104--d2f390becea773e3747cd4cc8acf6877.xml

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_100Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_200Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GQ/Kz/MD5E-s206687--cc5c0a3d30456906e15bcf8a2c4da812.nii.gz/MD5E-s206687--cc5c0a3d30456906e15bcf8a2c4da812.nii.gz

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_400Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

XHCUMS/sub-0026005/ses-3/mri/Schaefer2018_600Parcels_17Networks_order_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2Z/gf/MD5E-s309432--007b70a7aad613666c57ca81777b9d4a.nii.gz/MD5E-s309432--007b70a7aad613666c57ca81777b9d4a.nii.gz

XHCUMS/sub-0026005/ses-3/mri/Tian_Subcortex_S2_7T_sub-0026005_ses-3_run-1_T1w.csv

@@ -0,0 +1 @@
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XHCUMS/sub-0026005/ses-3/mri/Tian_Subcortex_S2_7T_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0026005/ses-3/mri/aal3_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/aal3_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0026005/ses-3/mri/anatomy3_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/anatomy3_sub-0026005_ses-3_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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XHCUMS/sub-0026005/ses-3/mri/anon_misub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/anon_msub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/cat_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/cobra_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/cobra_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/hammers_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/hammers_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/ibsr_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/ibsr_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/it_sub-0026005_ses-3_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/vM/MD5E-s283--54dd98148f33380743f228b8190ab22a.mat/MD5E-s283--54dd98148f33380743f228b8190ab22a.mat

XHCUMS/sub-0026005/ses-3/mri/it_sub-0026005_ses-3_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0026005/ses-3/mri/iy_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/julichbrain_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/julichbrain_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/lpba40_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/lpba40_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/m0wp1sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/m0wp2sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/m0wp3sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/mori_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/mori_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/mwp1sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/mwp2sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/mwp3sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/neuromorphometrics_sub-0026005_ses-3_run-1_T1w.csv

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XHCUMS/sub-0026005/ses-3/mri/neuromorphometrics_sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/p0sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/p1sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/p2sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/p3sub-0026005_ses-3_run-1_T1w.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/rp1sub-0026005_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/rp2sub-0026005_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/rp3sub-0026005_ses-3_run-1_T1w_affine.nii.gz

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XHCUMS/sub-0026005/ses-3/mri/t_sub-0026005_ses-3_run-1_T1w_affine_reorient.mat

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XHCUMS/sub-0026005/ses-3/mri/t_sub-0026005_ses-3_run-1_T1w_rigid_reorient.mat

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XHCUMS/sub-0026005/ses-3/mri/thalamus_sub-0026005_ses-3_run-1_T1w.csv

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