[DATALAD RUNCMD] Compute NYU_2/sub-0025076/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025076/ses-1/anat/sub-0025076_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025076/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025076/ses-1/label/catROI_sub-0025076_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pM/KW/MD5E-s57880--3490f6b923753a9a0b7971fbf77cec82.mat/MD5E-s57880--3490f6b923753a9a0b7971fbf77cec82.mat

NYU_2/sub-0025076/ses-1/label/catROI_sub-0025076_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KV/Vq/MD5E-s189099--7c6c31df71eb22873060cff9b7eceacb.xml/MD5E-s189099--7c6c31df71eb22873060cff9b7eceacb.xml

NYU_2/sub-0025076/ses-1/label/catROI_sub-0025076_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/J4/X8/MD5E-s57894--439b57931c47f144f812ad43522cb6c3.mat/MD5E-s57894--439b57931c47f144f812ad43522cb6c3.mat

NYU_2/sub-0025076/ses-1/label/catROI_sub-0025076_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zj/65/MD5E-s189103--46ae301ccb99127efe88a8577fcb21ac.xml/MD5E-s189103--46ae301ccb99127efe88a8577fcb21ac.xml

NYU_2/sub-0025076/ses-1/label/catROIs_sub-0025076_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ff/k9/MD5E-s120214--dfe36e86d94e428a978456f3af050a43.mat/MD5E-s120214--dfe36e86d94e428a978456f3af050a43.mat

NYU_2/sub-0025076/ses-1/label/catROIs_sub-0025076_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Z4/j8/MD5E-s332086--5a814eea4c49962a793e913ffe78ed7f.xml/MD5E-s332086--5a814eea4c49962a793e913ffe78ed7f.xml

NYU_2/sub-0025076/ses-1/label/catROIs_sub-0025076_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fP/4x/MD5E-s120213--c8bde6e17be0708b60ebca9a25cdc9ea.mat/MD5E-s120213--c8bde6e17be0708b60ebca9a25cdc9ea.mat

NYU_2/sub-0025076/ses-1/label/catROIs_sub-0025076_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/mM/kW/MD5E-s332191--70ff5c46c74fb08e65e7210245117c13.xml/MD5E-s332191--70ff5c46c74fb08e65e7210245117c13.xml

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qv/X9/MD5E-s139433--8b0f35c935594e7f5c2b4d07ce778cc3.nii.gz/MD5E-s139433--8b0f35c935594e7f5c2b4d07ce778cc3.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/3x/jV/MD5E-s139810--cc95164e7bdb079162e808808f5a3e0d.nii.gz/MD5E-s139810--cc95164e7bdb079162e808808f5a3e0d.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/F2/wX/MD5E-s155314--6d0362ad90ede758556c538a3312a2c3.nii.gz/MD5E-s155314--6d0362ad90ede758556c538a3312a2c3.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/9X/7z/MD5E-s155556--e78a8894bce7c36510be0202943c7334.nii.gz/MD5E-s155556--e78a8894bce7c36510be0202943c7334.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mZ/GJ/MD5E-s210754--5708b0512a6db52725297ade8fa5ec5b.nii.gz/MD5E-s210754--5708b0512a6db52725297ade8fa5ec5b.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Zj/FJ/MD5E-s211304--be467f4262e7e36d8ba16dd640bd24c6.nii.gz/MD5E-s211304--be467f4262e7e36d8ba16dd640bd24c6.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GV/7J/MD5E-s233170--f5633df6308536f5d7900bfcf05fcffc.nii.gz/MD5E-s233170--f5633df6308536f5d7900bfcf05fcffc.nii.gz

NYU_2/sub-0025076/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/38/1Z/MD5E-s233664--d98475f6e68b0ae61d150c7d891ac7d9.nii.gz/MD5E-s233664--d98475f6e68b0ae61d150c7d891ac7d9.nii.gz

NYU_2/sub-0025076/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fv/xk/MD5E-s19223--34bf93f0772f9b39dd08beaabc257f26.nii.gz/MD5E-s19223--34bf93f0772f9b39dd08beaabc257f26.nii.gz

NYU_2/sub-0025076/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/pw/0g/MD5E-s19371--1f617d431d7d84cbd94fbfc347008d71.nii.gz/MD5E-s19371--1f617d431d7d84cbd94fbfc347008d71.nii.gz

NYU_2/sub-0025076/ses-1/mri/aal3_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8J/Zp/MD5E-s158413--ea74475b2a2b0bb257befd1dac961a51.nii.gz/MD5E-s158413--ea74475b2a2b0bb257befd1dac961a51.nii.gz

NYU_2/sub-0025076/ses-1/mri/aal3_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Q4/gz/MD5E-s158651--013f09b48183f0a65e312307422f5e6e.nii.gz/MD5E-s158651--013f09b48183f0a65e312307422f5e6e.nii.gz

NYU_2/sub-0025076/ses-1/mri/anatomy3_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WV/1m/MD5E-s110561--64980dfad3df4458d855398d02af8522.nii.gz/MD5E-s110561--64980dfad3df4458d855398d02af8522.nii.gz

NYU_2/sub-0025076/ses-1/mri/anatomy3_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zm/J3/MD5E-s111136--df1cf12c13735b52572dca8706b89288.nii.gz/MD5E-s111136--df1cf12c13735b52572dca8706b89288.nii.gz

NYU_2/sub-0025076/ses-1/mri/anon_misub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v1/9f/MD5E-s3847713--1977926bd42e4c6b2e7cca39f04c7e68.nii.gz/MD5E-s3847713--1977926bd42e4c6b2e7cca39f04c7e68.nii.gz

NYU_2/sub-0025076/ses-1/mri/anon_misub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/p1/wZ/MD5E-s3906221--d5c7cdc756e616088414567106252d3e.nii.gz/MD5E-s3906221--d5c7cdc756e616088414567106252d3e.nii.gz

NYU_2/sub-0025076/ses-1/mri/anon_msub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/JV/MD5E-s6816389--b77d35186c52f1a9c6778b601de3af9e.nii.gz/MD5E-s6816389--b77d35186c52f1a9c6778b601de3af9e.nii.gz

NYU_2/sub-0025076/ses-1/mri/anon_msub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/wZ/1p/MD5E-s6800261--32bb4cea0bbc4eff3273004929016d52.nii.gz/MD5E-s6800261--32bb4cea0bbc4eff3273004929016d52.nii.gz

NYU_2/sub-0025076/ses-1/mri/cat_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XM/Z1/MD5E-s82136--c4c5ad2ef7269d472edc9ab8a4eb037d.nii.gz/MD5E-s82136--c4c5ad2ef7269d472edc9ab8a4eb037d.nii.gz

NYU_2/sub-0025076/ses-1/mri/cat_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Fq/FM/MD5E-s81977--f14e35390204faa5fbae75dc488dd22e.nii.gz/MD5E-s81977--f14e35390204faa5fbae75dc488dd22e.nii.gz

NYU_2/sub-0025076/ses-1/mri/cobra_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zV/KW/MD5E-s37736--6b8a5246b3c3f021bce362af5c45aff9.nii.gz/MD5E-s37736--6b8a5246b3c3f021bce362af5c45aff9.nii.gz

NYU_2/sub-0025076/ses-1/mri/cobra_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/x1/7g/MD5E-s37457--aba0425ff9868f67da2c940ecaa104ce.nii.gz/MD5E-s37457--aba0425ff9868f67da2c940ecaa104ce.nii.gz

NYU_2/sub-0025076/ses-1/mri/hammers_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/80/F0/MD5E-s121772--8ecf6660556aeac298995dac4b3f3b6a.nii.gz/MD5E-s121772--8ecf6660556aeac298995dac4b3f3b6a.nii.gz

NYU_2/sub-0025076/ses-1/mri/hammers_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Pv/j7/MD5E-s121842--cdb3cc7e5351836f6637efb31ecf64ba.nii.gz/MD5E-s121842--cdb3cc7e5351836f6637efb31ecf64ba.nii.gz

NYU_2/sub-0025076/ses-1/mri/ibsr_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K8/V8/MD5E-s128107--319e899baafcfbe419853b7f417ffb92.nii.gz/MD5E-s128107--319e899baafcfbe419853b7f417ffb92.nii.gz

NYU_2/sub-0025076/ses-1/mri/ibsr_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/it_sub-0025076_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vk/0w/MD5E-s285--2db56a18124903b677e2274ff79cdde2.mat/MD5E-s285--2db56a18124903b677e2274ff79cdde2.mat

NYU_2/sub-0025076/ses-1/mri/it_sub-0025076_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jg/90/MD5E-s283--4e4bad580f85ead9cbf53f593662ceaa.mat/MD5E-s283--4e4bad580f85ead9cbf53f593662ceaa.mat

NYU_2/sub-0025076/ses-1/mri/it_sub-0025076_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/2z/Xg/MD5E-s283--ebf5c9c5e6ae6fe91fb8bf5cd0f25349.mat/MD5E-s283--ebf5c9c5e6ae6fe91fb8bf5cd0f25349.mat

NYU_2/sub-0025076/ses-1/mri/it_sub-0025076_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/zj/08/MD5E-s283--83a853f5a57c8c1592c5847fd184e4c6.mat/MD5E-s283--83a853f5a57c8c1592c5847fd184e4c6.mat

NYU_2/sub-0025076/ses-1/mri/iy_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/62/Vw/MD5E-s33245688--8beb56fd1c6c49f66f7313db5ebba08d.nii.gz/MD5E-s33245688--8beb56fd1c6c49f66f7313db5ebba08d.nii.gz

NYU_2/sub-0025076/ses-1/mri/iy_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/julichbrain_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/M4/g3/MD5E-s164352--221c6dbbb54d0ba1a262337f399b9f99.nii.gz/MD5E-s164352--221c6dbbb54d0ba1a262337f399b9f99.nii.gz

NYU_2/sub-0025076/ses-1/mri/julichbrain_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/lpba40_sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mf/mK/MD5E-s119707--00706022b2f5c0d3f9503694ac8dc2ff.nii.gz/MD5E-s119707--00706022b2f5c0d3f9503694ac8dc2ff.nii.gz

NYU_2/sub-0025076/ses-1/mri/lpba40_sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/m0wp1sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025076/ses-1/mri/m0wp1sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/m0wp2sub-0025076_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jv/J2/MD5E-s2262809--fa7aad862171d667707605a96cc2889a.nii.gz/MD5E-s2262809--fa7aad862171d667707605a96cc2889a.nii.gz

NYU_2/sub-0025076/ses-1/mri/m0wp2sub-0025076_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/m0wp3sub-0025076_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/m0wp3sub-0025076_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/mori_sub-0025076_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/mori_sub-0025076_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/mwp1sub-0025076_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025076/ses-1/mri/mwp1sub-0025076_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025076/ses-1/mri/mwp2sub-0025076_ses-1_run-1_T1w.nii.gz

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