[DATALAD RUNCMD] Compute NYU_2/sub-0025164/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025164/ses-1/anat/sub-0025164_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025164/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025164/ses-1/label/catROI_sub-0025164_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/V9/pm/MD5E-s57920--b0b4c0ea5019eff4c52de73f86cb298a.mat/MD5E-s57920--b0b4c0ea5019eff4c52de73f86cb298a.mat

NYU_2/sub-0025164/ses-1/label/catROI_sub-0025164_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qq/Gg/MD5E-s188973--749ba39fb05208a83701fa113b3fcde5.xml/MD5E-s188973--749ba39fb05208a83701fa113b3fcde5.xml

NYU_2/sub-0025164/ses-1/label/catROI_sub-0025164_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/z1/3w/MD5E-s57766--905501af1905fde24811b42e3023e69f.mat/MD5E-s57766--905501af1905fde24811b42e3023e69f.mat

NYU_2/sub-0025164/ses-1/label/catROI_sub-0025164_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fP/VZ/MD5E-s188744--9fd370f0585080775a71381f4023fc2f.xml/MD5E-s188744--9fd370f0585080775a71381f4023fc2f.xml

NYU_2/sub-0025164/ses-1/label/catROIs_sub-0025164_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/M4/MD5E-s120210--423c424edde1538ad194822cdab7cc0e.mat/MD5E-s120210--423c424edde1538ad194822cdab7cc0e.mat

NYU_2/sub-0025164/ses-1/label/catROIs_sub-0025164_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4V/88/MD5E-s332176--767ceb7780ec83d5ff4ee590c009974f.xml/MD5E-s332176--767ceb7780ec83d5ff4ee590c009974f.xml

NYU_2/sub-0025164/ses-1/label/catROIs_sub-0025164_ses-1_run-2_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/91/w5/MD5E-s120211--1a0b8e255b5b940f4767bec0cf981efc.mat/MD5E-s120211--1a0b8e255b5b940f4767bec0cf981efc.mat

NYU_2/sub-0025164/ses-1/label/catROIs_sub-0025164_ses-1_run-2_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gW/M3/MD5E-s332097--ba0fd631d17d6266173cc6ebd51253a2.xml/MD5E-s332097--ba0fd631d17d6266173cc6ebd51253a2.xml

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kJ/Zj/MD5E-s137581--04fe733e184bc84a56c36c7977641c93.nii.gz/MD5E-s137581--04fe733e184bc84a56c36c7977641c93.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Gf/36/MD5E-s137792--0d5d92d384ee1caa105be5be7212a6fa.nii.gz/MD5E-s137792--0d5d92d384ee1caa105be5be7212a6fa.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vQ/VG/MD5E-s155584--11768acaad5d90cda26ea6b3955661a9.nii.gz/MD5E-s155584--11768acaad5d90cda26ea6b3955661a9.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Zz/G3/MD5E-s155160--a8ddf28d73074b9128b3d1602d13d1a5.nii.gz/MD5E-s155160--a8ddf28d73074b9128b3d1602d13d1a5.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9j/fG/MD5E-s208052--3fea65c2e004c382ecb9b41bc4f22929.nii.gz/MD5E-s208052--3fea65c2e004c382ecb9b41bc4f22929.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/fM/jm/MD5E-s208033--5cac9a284c616e5d9d1d1440d3c5fb55.nii.gz/MD5E-s208033--5cac9a284c616e5d9d1d1440d3c5fb55.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kp/J9/MD5E-s231609--c3f4d375e905df9393135bae5a5237ea.nii.gz/MD5E-s231609--c3f4d375e905df9393135bae5a5237ea.nii.gz

NYU_2/sub-0025164/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jj/Qz/MD5E-s232073--749d4dc5763335b22e98e8ea124767de.nii.gz/MD5E-s232073--749d4dc5763335b22e98e8ea124767de.nii.gz

NYU_2/sub-0025164/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xm/87/MD5E-s18994--c0ae57fdc522cf7add3e31fc18dc7042.nii.gz/MD5E-s18994--c0ae57fdc522cf7add3e31fc18dc7042.nii.gz

NYU_2/sub-0025164/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5v/6K/MD5E-s18825--533ee421236a832a0fa27a4599f727fd.nii.gz/MD5E-s18825--533ee421236a832a0fa27a4599f727fd.nii.gz

NYU_2/sub-0025164/ses-1/mri/aal3_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wp/F7/MD5E-s160589--8319a823441355ada1f25867cec07312.nii.gz/MD5E-s160589--8319a823441355ada1f25867cec07312.nii.gz

NYU_2/sub-0025164/ses-1/mri/aal3_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/27/mm/MD5E-s160314--8a7ce7a8de6d0038c3e5d8f34d395cb5.nii.gz/MD5E-s160314--8a7ce7a8de6d0038c3e5d8f34d395cb5.nii.gz

NYU_2/sub-0025164/ses-1/mri/anatomy3_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Pf/G6/MD5E-s110051--a111b3206c6a354f39932f36647d11b7.nii.gz/MD5E-s110051--a111b3206c6a354f39932f36647d11b7.nii.gz

NYU_2/sub-0025164/ses-1/mri/anatomy3_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Mw/qv/MD5E-s109780--afc5e05eb546579a1266d9c207442bdb.nii.gz/MD5E-s109780--afc5e05eb546579a1266d9c207442bdb.nii.gz

NYU_2/sub-0025164/ses-1/mri/anon_misub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/g1/MD5E-s3889337--c9f3b642054943d12604d7d650f95e56.nii.gz/MD5E-s3889337--c9f3b642054943d12604d7d650f95e56.nii.gz

NYU_2/sub-0025164/ses-1/mri/anon_misub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6f/64/MD5E-s3903543--53296cd13f15b79399d3c6387d329293.nii.gz/MD5E-s3903543--53296cd13f15b79399d3c6387d329293.nii.gz

NYU_2/sub-0025164/ses-1/mri/anon_msub-0025164_ses-1_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/V2/pg/MD5E-s9327455--3212f9683001a0dd3f60499321458ab1.nii.gz/MD5E-s9327455--3212f9683001a0dd3f60499321458ab1.nii.gz

NYU_2/sub-0025164/ses-1/mri/anon_msub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/MW/7f/MD5E-s9315844--0fb197092f184c7f50c742f3d759c301.nii.gz/MD5E-s9315844--0fb197092f184c7f50c742f3d759c301.nii.gz

NYU_2/sub-0025164/ses-1/mri/cat_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/K9/Zj/MD5E-s80923--d38547b628f1e56a82290d857b63d48f.nii.gz/MD5E-s80923--d38547b628f1e56a82290d857b63d48f.nii.gz

NYU_2/sub-0025164/ses-1/mri/cat_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/f9/Zw/MD5E-s81220--3345ce9135100d7dcec875f6797b39af.nii.gz/MD5E-s81220--3345ce9135100d7dcec875f6797b39af.nii.gz

NYU_2/sub-0025164/ses-1/mri/cobra_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w1/46/MD5E-s39458--90531415174b7dc6fc2a1b3ed9e8a994.nii.gz/MD5E-s39458--90531415174b7dc6fc2a1b3ed9e8a994.nii.gz

NYU_2/sub-0025164/ses-1/mri/cobra_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025164/ses-1/mri/hammers_sub-0025164_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZJ/J7/MD5E-s120524--30acb004a0c956993b40bc6f06520f99.nii.gz/MD5E-s120524--30acb004a0c956993b40bc6f06520f99.nii.gz

NYU_2/sub-0025164/ses-1/mri/hammers_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025164/ses-1/mri/ibsr_sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/ibsr_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025164/ses-1/mri/it_sub-0025164_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZG/KW/MD5E-s283--c0f3970e5b72e799a03387d3050569a0.mat/MD5E-s283--c0f3970e5b72e799a03387d3050569a0.mat

NYU_2/sub-0025164/ses-1/mri/it_sub-0025164_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025164/ses-1/mri/it_sub-0025164_ses-1_run-2_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/8w/F1/MD5E-s282--1708181b4393f27cc07b63ec0fa3f933.mat/MD5E-s282--1708181b4393f27cc07b63ec0fa3f933.mat

NYU_2/sub-0025164/ses-1/mri/it_sub-0025164_ses-1_run-2_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025164/ses-1/mri/iy_sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/iy_sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/julichbrain_sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/julichbrain_sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/lpba40_sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/lpba40_sub-0025164_ses-1_run-2_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025164/ses-1/mri/m0wp1sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/m0wp1sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/m0wp2sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/m0wp2sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/m0wp3sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/m0wp3sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/mori_sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/mori_sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/mwp1sub-0025164_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/mwp1sub-0025164_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025164/ses-1/mri/mwp2sub-0025164_ses-1_run-1_T1w.nii.gz

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