[DATALAD RUNCMD] Compute SWU_4/sub-0025649/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/SWU_4/sub-0025649/ses-1/anat/sub-0025649_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "SWU_4/sub-0025649/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

SWU_4/sub-0025649/ses-1/label/catROI_sub-0025649_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/P5/w3/MD5E-s61221--7a030625e1fb3be8f00cbac15bdc1d72.mat/MD5E-s61221--7a030625e1fb3be8f00cbac15bdc1d72.mat

SWU_4/sub-0025649/ses-1/label/catROI_sub-0025649_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/55/Z5/MD5E-s189007--e73e28afd58cab9da72745c49af572b0.xml/MD5E-s189007--e73e28afd58cab9da72745c49af572b0.xml

SWU_4/sub-0025649/ses-1/label/catROIs_sub-0025649_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G7/X0/MD5E-s120196--52187ad90619c584d36201595483d778.mat/MD5E-s120196--52187ad90619c584d36201595483d778.mat

SWU_4/sub-0025649/ses-1/label/catROIs_sub-0025649_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KW/3f/MD5E-s332109--c2e45e08f08c7a523ea13aba202135ab.xml/MD5E-s332109--c2e45e08f08c7a523ea13aba202135ab.xml

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/45/ZG/MD5E-s153177--9fdd0aee56671a7ff5f496dbc2835647.nii.gz/MD5E-s153177--9fdd0aee56671a7ff5f496dbc2835647.nii.gz

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GW/7p/MD5E-s172656--e67eeb5fde89e318998054c815245662.nii.gz/MD5E-s172656--e67eeb5fde89e318998054c815245662.nii.gz

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/18/JK/MD5E-s231109--b6606d24641db80fc251bf1aba2bc8da.nii.gz/MD5E-s231109--b6606d24641db80fc251bf1aba2bc8da.nii.gz

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

SWU_4/sub-0025649/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/22/41/MD5E-s258234--ec705e2971267aae457806ae6b7bedf9.nii.gz/MD5E-s258234--ec705e2971267aae457806ae6b7bedf9.nii.gz

SWU_4/sub-0025649/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

SWU_4/sub-0025649/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/86/qK/MD5E-s23771--2f99792ea7ab88cd85eb54c718a60d2d.nii.gz/MD5E-s23771--2f99792ea7ab88cd85eb54c718a60d2d.nii.gz

SWU_4/sub-0025649/ses-1/mri/aal3_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

SWU_4/sub-0025649/ses-1/mri/aal3_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8x/w0/MD5E-s172267--e9c91c77b4f06b675f06be17d85625ba.nii.gz/MD5E-s172267--e9c91c77b4f06b675f06be17d85625ba.nii.gz

SWU_4/sub-0025649/ses-1/mri/anatomy3_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

SWU_4/sub-0025649/ses-1/mri/anatomy3_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z6/3Q/MD5E-s125947--7eb236506639b70b9a2eb2e3b8af8374.nii.gz/MD5E-s125947--7eb236506639b70b9a2eb2e3b8af8374.nii.gz

SWU_4/sub-0025649/ses-1/mri/anon_misub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1J/Pv/MD5E-s7900448--cf71d942e0361bb405cfd2795020d7f3.nii.gz/MD5E-s7900448--cf71d942e0361bb405cfd2795020d7f3.nii.gz

SWU_4/sub-0025649/ses-1/mri/anon_msub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/7z/q9/MD5E-s7261036--1048967b2a5669d695c029e0317c6cb8.nii.gz/MD5E-s7261036--1048967b2a5669d695c029e0317c6cb8.nii.gz

SWU_4/sub-0025649/ses-1/mri/cat_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1j/7f/MD5E-s94283--ce77e6d69ce041edc7522861f7126d59.nii.gz/MD5E-s94283--ce77e6d69ce041edc7522861f7126d59.nii.gz

SWU_4/sub-0025649/ses-1/mri/cobra_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

SWU_4/sub-0025649/ses-1/mri/cobra_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/87/MD5E-s44287--9214883bef488ee203e7d8034631e9c2.nii.gz/MD5E-s44287--9214883bef488ee203e7d8034631e9c2.nii.gz

SWU_4/sub-0025649/ses-1/mri/hammers_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

SWU_4/sub-0025649/ses-1/mri/hammers_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VZ/3G/MD5E-s136838--e9571d684c9a8443b1fe3ef8b4917e36.nii.gz/MD5E-s136838--e9571d684c9a8443b1fe3ef8b4917e36.nii.gz

SWU_4/sub-0025649/ses-1/mri/ibsr_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

SWU_4/sub-0025649/ses-1/mri/ibsr_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gJ/JK/MD5E-s145116--3881a676afddc2329766ae17dd94e234.nii.gz/MD5E-s145116--3881a676afddc2329766ae17dd94e234.nii.gz

SWU_4/sub-0025649/ses-1/mri/it_sub-0025649_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x7/wv/MD5E-s282--21ba39ff7e34795db88e5d8d33def0db.mat/MD5E-s282--21ba39ff7e34795db88e5d8d33def0db.mat

SWU_4/sub-0025649/ses-1/mri/it_sub-0025649_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3V/7F/MD5E-s283--a6f11ce3a48bbc2d08bb6c8956431e92.mat/MD5E-s283--a6f11ce3a48bbc2d08bb6c8956431e92.mat

SWU_4/sub-0025649/ses-1/mri/iy_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1k/MK/MD5E-s41513703--026ee3710ed00cc017c141f8b13523f7.nii.gz/MD5E-s41513703--026ee3710ed00cc017c141f8b13523f7.nii.gz

SWU_4/sub-0025649/ses-1/mri/julichbrain_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

SWU_4/sub-0025649/ses-1/mri/julichbrain_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f5/8v/MD5E-s182834--b4ffb03a41048af3dda2b63a46210323.nii.gz/MD5E-s182834--b4ffb03a41048af3dda2b63a46210323.nii.gz

SWU_4/sub-0025649/ses-1/mri/lpba40_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

SWU_4/sub-0025649/ses-1/mri/lpba40_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/Mk/MD5E-s135468--b0b591fbced8806f093bf872b7d8501d.nii.gz/MD5E-s135468--b0b591fbced8806f093bf872b7d8501d.nii.gz

SWU_4/sub-0025649/ses-1/mri/m0wp1sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xG/qm/MD5E-s2574599--1cce923d028a5a89c0bf7ee8fb53e3c6.nii.gz/MD5E-s2574599--1cce923d028a5a89c0bf7ee8fb53e3c6.nii.gz

SWU_4/sub-0025649/ses-1/mri/m0wp2sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/5V/8q/MD5E-s2293014--af0098b0dba166b0b21db03402c3f4a1.nii.gz/MD5E-s2293014--af0098b0dba166b0b21db03402c3f4a1.nii.gz

SWU_4/sub-0025649/ses-1/mri/m0wp3sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/8w/MD5E-s2511824--712032ab3138ff715f7b502d40da1276.nii.gz/MD5E-s2511824--712032ab3138ff715f7b502d40da1276.nii.gz

SWU_4/sub-0025649/ses-1/mri/mori_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

SWU_4/sub-0025649/ses-1/mri/mori_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v2/fz/MD5E-s158925--14d7c733f954f9aef231197a5700d1c7.nii.gz/MD5E-s158925--14d7c733f954f9aef231197a5700d1c7.nii.gz

SWU_4/sub-0025649/ses-1/mri/mwp1sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zQ/9j/MD5E-s2586799--b6d837d193828ac89b30ee2fe875b2bd.nii.gz/MD5E-s2586799--b6d837d193828ac89b30ee2fe875b2bd.nii.gz

SWU_4/sub-0025649/ses-1/mri/mwp2sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Kq/jp/MD5E-s2299979--e1ba7ffa694f8627a8b721cfd137f017.nii.gz/MD5E-s2299979--e1ba7ffa694f8627a8b721cfd137f017.nii.gz

SWU_4/sub-0025649/ses-1/mri/mwp3sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jp/8K/MD5E-s2510914--abb5ef675e469d970d5f589a6cad3d13.nii.gz/MD5E-s2510914--abb5ef675e469d970d5f589a6cad3d13.nii.gz

SWU_4/sub-0025649/ses-1/mri/neuromorphometrics_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w9/vx/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv/MD5E-s6638--e2cdef92ec4761f71c0546923418c27b.csv

SWU_4/sub-0025649/ses-1/mri/neuromorphometrics_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/3w/MM/MD5E-s186080--979d9e7bf7fcee5ec2208ab5ef43981b.nii.gz/MD5E-s186080--979d9e7bf7fcee5ec2208ab5ef43981b.nii.gz

SWU_4/sub-0025649/ses-1/mri/p0sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6j/9g/MD5E-s569094--796ac696b5be54a80dc6b308c51c7e25.nii.gz/MD5E-s569094--796ac696b5be54a80dc6b308c51c7e25.nii.gz

SWU_4/sub-0025649/ses-1/mri/p1sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/XZ/0x/MD5E-s603371--b0167a28f039594a1eb511c399d132eb.nii.gz/MD5E-s603371--b0167a28f039594a1eb511c399d132eb.nii.gz

SWU_4/sub-0025649/ses-1/mri/p2sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vv/80/MD5E-s395733--c144a4a03c383cc80ae9e7e6184854cb.nii.gz/MD5E-s395733--c144a4a03c383cc80ae9e7e6184854cb.nii.gz

SWU_4/sub-0025649/ses-1/mri/p3sub-0025649_ses-1_run-1_T1w.nii.gz

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SWU_4/sub-0025649/ses-1/mri/rp1sub-0025649_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m9/pM/MD5E-s440963--af775fb1c2d2dc2ff0a452cfa53e3fe7.nii.gz/MD5E-s440963--af775fb1c2d2dc2ff0a452cfa53e3fe7.nii.gz

SWU_4/sub-0025649/ses-1/mri/rp2sub-0025649_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025649/ses-1/mri/rp3sub-0025649_ses-1_run-1_T1w_affine.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025649/ses-1/mri/t_sub-0025649_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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SWU_4/sub-0025649/ses-1/mri/t_sub-0025649_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/gk/kz/MD5E-s284--c3a36a003a572ea255842d7300a69196.mat/MD5E-s284--c3a36a003a572ea255842d7300a69196.mat

SWU_4/sub-0025649/ses-1/mri/thalamus_sub-0025649_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fW/VK/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv/MD5E-s870--1d6eb64a1942214ec592afc1dbf8fbb2.csv

SWU_4/sub-0025649/ses-1/mri/thalamus_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/WF/QP/MD5E-s16201--51bb282115b40980aaa5ab7e3d85cac1.nii.gz/MD5E-s16201--51bb282115b40980aaa5ab7e3d85cac1.nii.gz

SWU_4/sub-0025649/ses-1/mri/wj_sub-0025649_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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SWU_4/sub-0025649/ses-1/mri/wmisub-0025649_ses-1_run-1_T1w.nii.gz

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