[DATALAD RUNCMD] Compute NYU_2/sub-0025085/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025085/ses-1/anat/sub-0025085_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025085/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025085/ses-1/label/catROI_sub-0025085_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/33/09/MD5E-s57915--5cd19d15a75efd66957307bf82314fb7.mat/MD5E-s57915--5cd19d15a75efd66957307bf82314fb7.mat

NYU_2/sub-0025085/ses-1/label/catROI_sub-0025085_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/V1/W1/MD5E-s189184--e7e8619c1ed43db0ccaeb9ad57aee028.xml/MD5E-s189184--e7e8619c1ed43db0ccaeb9ad57aee028.xml

NYU_2/sub-0025085/ses-1/label/catROI_sub-0025085_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6W/PV/MD5E-s57795--badc44c1a9856fe7dc4cf57a297da895.mat/MD5E-s57795--badc44c1a9856fe7dc4cf57a297da895.mat

NYU_2/sub-0025085/ses-1/label/catROI_sub-0025085_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wf/xK/MD5E-s189150--ce4725721573ae0059606c247409d127.xml/MD5E-s189150--ce4725721573ae0059606c247409d127.xml

NYU_2/sub-0025085/ses-1/label/catROIs_sub-0025085_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Kj/VJ/MD5E-s120275--b1203bf0daddd50e918b29365393f89b.mat/MD5E-s120275--b1203bf0daddd50e918b29365393f89b.mat

NYU_2/sub-0025085/ses-1/label/catROIs_sub-0025085_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vX/4z/MD5E-s332171--87edc59a2504a6c7b86a814c14440be9.xml/MD5E-s332171--87edc59a2504a6c7b86a814c14440be9.xml

NYU_2/sub-0025085/ses-1/label/catROIs_sub-0025085_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0K/5X/MD5E-s120259--82dc684446add24e00fdc8409080e427.mat/MD5E-s120259--82dc684446add24e00fdc8409080e427.mat

NYU_2/sub-0025085/ses-1/label/catROIs_sub-0025085_ses-1_run-2_T1w.xml

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+../../../../.git/annex/objects/pv/Jm/MD5E-s332170--087a09eeb314a85ac9df213c9817391f.xml/MD5E-s332170--087a09eeb314a85ac9df213c9817391f.xml

NYU_2/sub-0025085/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xx/mq/MD5E-s133510--7b0c108cf08c226c99354f4e58e9b6ad.nii.gz/MD5E-s133510--7b0c108cf08c226c99354f4e58e9b6ad.nii.gz

NYU_2/sub-0025085/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025085_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025085/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/33/23/MD5E-s150139--69c048f0d54ed0a901efff5602477067.nii.gz/MD5E-s150139--69c048f0d54ed0a901efff5602477067.nii.gz

NYU_2/sub-0025085/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025085_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/48/MD5E-s150425--8565e1d116989fa490635f6b7642f9a3.nii.gz/MD5E-s150425--8565e1d116989fa490635f6b7642f9a3.nii.gz

NYU_2/sub-0025085/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5g/PJ/MD5E-s201064--b036b71ae34160efd0aeb2b31cfa3f7c.nii.gz/MD5E-s201064--b036b71ae34160efd0aeb2b31cfa3f7c.nii.gz

NYU_2/sub-0025085/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025085_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025085/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025085_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/G4/GJ/MD5E-s18390--7f03cb81ef8f24e37f7a190870dc6d98.nii.gz/MD5E-s18390--7f03cb81ef8f24e37f7a190870dc6d98.nii.gz

NYU_2/sub-0025085/ses-1/mri/aal3_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/aal3_sub-0025085_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025085/ses-1/mri/anatomy3_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/anatomy3_sub-0025085_ses-1_run-2_T1w.nii.gz

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+../../../../.git/annex/objects/fm/p5/MD5E-s107109--14901b97d765eae1bb95db5bcbc1140f.nii.gz/MD5E-s107109--14901b97d765eae1bb95db5bcbc1140f.nii.gz

NYU_2/sub-0025085/ses-1/mri/anon_misub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/anon_misub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/anon_msub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/anon_msub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/cat_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/cat_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/cobra_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/cobra_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/hammers_sub-0025085_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/hammers_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/ibsr_sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/ibsr_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/it_sub-0025085_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025085/ses-1/mri/it_sub-0025085_ses-1_run-1_T1w_rigid_reorient.mat

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NYU_2/sub-0025085/ses-1/mri/it_sub-0025085_ses-1_run-2_T1w_affine_reorient.mat

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NYU_2/sub-0025085/ses-1/mri/it_sub-0025085_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025085/ses-1/mri/iy_sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/iy_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/julichbrain_sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/julichbrain_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/lpba40_sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/lpba40_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp1sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp1sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp2sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp2sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp3sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/m0wp3sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/mori_sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/mori_sub-0025085_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/mwp1sub-0025085_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025085/ses-1/mri/mwp1sub-0025085_ses-1_run-2_T1w.nii.gz

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