[DATALAD RUNCMD] Compute IPCAS_1/sub-0025489/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IPCAS_1/sub-0025489/ses-2/anat/sub-0025489_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IPCAS_1/sub-0025489/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IPCAS_1/sub-0025489/ses-2/label/catROI_sub-0025489_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jf/J2/MD5E-s57653--3bfd1f5d1cf6e9634f663ffb6df4f3a5.mat/MD5E-s57653--3bfd1f5d1cf6e9634f663ffb6df4f3a5.mat

IPCAS_1/sub-0025489/ses-2/label/catROI_sub-0025489_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xw/kz/MD5E-s188946--c7e3eb432c57a88c057d6d8d0cf0526f.xml/MD5E-s188946--c7e3eb432c57a88c057d6d8d0cf0526f.xml

IPCAS_1/sub-0025489/ses-2/label/catROIs_sub-0025489_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/97/xv/MD5E-s120116--7868652157f969789a51d3cce7d33280.mat/MD5E-s120116--7868652157f969789a51d3cce7d33280.mat

IPCAS_1/sub-0025489/ses-2/label/catROIs_sub-0025489_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6Q/90/MD5E-s332077--d73c9aea6e0eb17b4659da07e4241a65.xml/MD5E-s332077--d73c9aea6e0eb17b4659da07e4241a65.xml

IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IPCAS_1/sub-0025489/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/aal3_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/aal3_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/anatomy3_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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IPCAS_1/sub-0025489/ses-2/mri/anatomy3_sub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/wq/gW/MD5E-s104978--a3397fdab06e8fbdfc7b6edd3fdfb6f9.nii.gz/MD5E-s104978--a3397fdab06e8fbdfc7b6edd3fdfb6f9.nii.gz

IPCAS_1/sub-0025489/ses-2/mri/anon_misub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/anon_msub-0025489_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZM/XJ/MD5E-s7643066--8685333789a8729a650a209bc0f8dc1f.nii.gz/MD5E-s7643066--8685333789a8729a650a209bc0f8dc1f.nii.gz

IPCAS_1/sub-0025489/ses-2/mri/cat_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/cobra_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IPCAS_1/sub-0025489/ses-2/mri/cobra_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/hammers_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/hammers_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/ibsr_sub-0025489_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IPCAS_1/sub-0025489/ses-2/mri/ibsr_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/it_sub-0025489_ses-2_run-1_T1w_affine_reorient.mat

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+../../../../.git/annex/objects/8P/25/MD5E-s282--a6b61be94c0f85e38c6de6a66d563624.mat/MD5E-s282--a6b61be94c0f85e38c6de6a66d563624.mat

IPCAS_1/sub-0025489/ses-2/mri/it_sub-0025489_ses-2_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025489/ses-2/mri/iy_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/julichbrain_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/julichbrain_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/lpba40_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/lpba40_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/m0wp1sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/m0wp2sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/m0wp3sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/mori_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/mori_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/mwp1sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/mwp2sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/mwp3sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/neuromorphometrics_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/neuromorphometrics_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/p0sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/p1sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/p2sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/p3sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/rp1sub-0025489_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/rp2sub-0025489_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/rp3sub-0025489_ses-2_run-1_T1w_affine.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/t_sub-0025489_ses-2_run-1_T1w_affine_reorient.mat

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IPCAS_1/sub-0025489/ses-2/mri/t_sub-0025489_ses-2_run-1_T1w_rigid_reorient.mat

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IPCAS_1/sub-0025489/ses-2/mri/thalamus_sub-0025489_ses-2_run-1_T1w.csv

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IPCAS_1/sub-0025489/ses-2/mri/thalamus_sub-0025489_ses-2_run-1_T1w.nii.gz

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IPCAS_1/sub-0025489/ses-2/mri/wj_sub-0025489_ses-2_run-1_T1w.nii.gz

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