[DATALAD RUNCMD] Compute IACAS/sub-0025479/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/IACAS/sub-0025479/ses-1/anat/sub-0025479_ses-1_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "IACAS/sub-0025479/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

IACAS/sub-0025479/ses-1/label/catROI_sub-0025479_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/MP/fQ/MD5E-s58261--a55988779ca49fbdfb7d4b897bdad5cc.mat/MD5E-s58261--a55988779ca49fbdfb7d4b897bdad5cc.mat

IACAS/sub-0025479/ses-1/label/catROI_sub-0025479_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/8Q/jk/MD5E-s188628--1c12bf65d73666ed4f47639ec0652b10.xml/MD5E-s188628--1c12bf65d73666ed4f47639ec0652b10.xml

IACAS/sub-0025479/ses-1/label/catROIs_sub-0025479_ses-1_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QG/M5/MD5E-s120222--4c12986963859612761b9c1d0caf8fb6.mat/MD5E-s120222--4c12986963859612761b9c1d0caf8fb6.mat

IACAS/sub-0025479/ses-1/label/catROIs_sub-0025479_ses-1_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6x/WG/MD5E-s332162--f26e18361a5db82297b19ce79b06eeb6.xml/MD5E-s332162--f26e18361a5db82297b19ce79b06eeb6.xml

IACAS/sub-0025479/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

IACAS/sub-0025479/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mv/mx/MD5E-s171436--e96f2d37f89c98154f5aa724b153ce3b.nii.gz/MD5E-s171436--e96f2d37f89c98154f5aa724b153ce3b.nii.gz

IACAS/sub-0025479/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

IACAS/sub-0025479/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/vp/J5/MD5E-s193183--8119d1dc1297b866959b4977243629b0.nii.gz/MD5E-s193183--8119d1dc1297b866959b4977243629b0.nii.gz

IACAS/sub-0025479/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

IACAS/sub-0025479/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/w2/gg/MD5E-s258716--eda67290ead44002275f95d767ab64af.nii.gz/MD5E-s258716--eda67290ead44002275f95d767ab64af.nii.gz

IACAS/sub-0025479/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

IACAS/sub-0025479/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Gk/jQ/MD5E-s288482--5172fcbbd1b2af836f5758ccb81ec557.nii.gz/MD5E-s288482--5172fcbbd1b2af836f5758ccb81ec557.nii.gz

IACAS/sub-0025479/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

IACAS/sub-0025479/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/m6/F7/MD5E-s26273--8cdf1f58ce802b0c78aae05c154941ed.nii.gz/MD5E-s26273--8cdf1f58ce802b0c78aae05c154941ed.nii.gz

IACAS/sub-0025479/ses-1/mri/aal3_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

IACAS/sub-0025479/ses-1/mri/aal3_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2f/6k/MD5E-s194179--c7b8a22afe77b69ddaae8416c3f1bb14.nii.gz/MD5E-s194179--c7b8a22afe77b69ddaae8416c3f1bb14.nii.gz

IACAS/sub-0025479/ses-1/mri/anatomy3_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

IACAS/sub-0025479/ses-1/mri/anatomy3_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/70/Pv/MD5E-s140227--ca51bd80b96a419f9d388a9d3f868a56.nii.gz/MD5E-s140227--ca51bd80b96a419f9d388a9d3f868a56.nii.gz

IACAS/sub-0025479/ses-1/mri/anon_misub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/6K/PG/MD5E-s9241381--812636428e878393e6917325d5534de0.nii.gz/MD5E-s9241381--812636428e878393e6917325d5534de0.nii.gz

IACAS/sub-0025479/ses-1/mri/anon_msub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p2/Q7/MD5E-s10451669--4465e16be3e0ecc21a463e21139d257f.nii.gz/MD5E-s10451669--4465e16be3e0ecc21a463e21139d257f.nii.gz

IACAS/sub-0025479/ses-1/mri/cat_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/q4/8Q/MD5E-s109739--96a26848b840a5bece6a2c06d5ed9f27.nii.gz/MD5E-s109739--96a26848b840a5bece6a2c06d5ed9f27.nii.gz

IACAS/sub-0025479/ses-1/mri/cobra_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

IACAS/sub-0025479/ses-1/mri/cobra_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/f0/Mz/MD5E-s50111--33793f5adbb40d5e2a89d0c2964265b8.nii.gz/MD5E-s50111--33793f5adbb40d5e2a89d0c2964265b8.nii.gz

IACAS/sub-0025479/ses-1/mri/hammers_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

IACAS/sub-0025479/ses-1/mri/hammers_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1q/G8/MD5E-s153596--21732fef839b45bfc76b9ecca0b38300.nii.gz/MD5E-s153596--21732fef839b45bfc76b9ecca0b38300.nii.gz

IACAS/sub-0025479/ses-1/mri/ibsr_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

IACAS/sub-0025479/ses-1/mri/ibsr_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/mf/v4/MD5E-s162286--522488afaa18282f0c52fb8b64818eac.nii.gz/MD5E-s162286--522488afaa18282f0c52fb8b64818eac.nii.gz

IACAS/sub-0025479/ses-1/mri/it_sub-0025479_ses-1_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/qP/Q4/MD5E-s282--5336ed29b6243425efbcb3b78e76b746.mat/MD5E-s282--5336ed29b6243425efbcb3b78e76b746.mat

IACAS/sub-0025479/ses-1/mri/it_sub-0025479_ses-1_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/k9/VX/MD5E-s284--142489f647a6ee4c85ab33f017b72d75.mat/MD5E-s284--142489f647a6ee4c85ab33f017b72d75.mat

IACAS/sub-0025479/ses-1/mri/iy_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jG/0k/MD5E-s48534465--221cd9d1fe52f508c8f4dfd887cff085.nii.gz/MD5E-s48534465--221cd9d1fe52f508c8f4dfd887cff085.nii.gz

IACAS/sub-0025479/ses-1/mri/julichbrain_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

IACAS/sub-0025479/ses-1/mri/julichbrain_sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/v3/85/MD5E-s206518--22303e093b395c1a06230cc9bee43563.nii.gz/MD5E-s206518--22303e093b395c1a06230cc9bee43563.nii.gz

IACAS/sub-0025479/ses-1/mri/lpba40_sub-0025479_ses-1_run-1_T1w.csv

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IACAS/sub-0025479/ses-1/mri/lpba40_sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/m0wp1sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/m0wp2sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j2/5F/MD5E-s2392666--1d1745d539fe9e8e7fed9de698e68b34.nii.gz/MD5E-s2392666--1d1745d539fe9e8e7fed9de698e68b34.nii.gz

IACAS/sub-0025479/ses-1/mri/m0wp3sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/mori_sub-0025479_ses-1_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Xv/zk/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv/MD5E-s5456--9f4808b9e7bd4b0eac1143e97b261e05.csv

IACAS/sub-0025479/ses-1/mri/mori_sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/mwp1sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/mwp2sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/mwp3sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/neuromorphometrics_sub-0025479_ses-1_run-1_T1w.csv

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IACAS/sub-0025479/ses-1/mri/neuromorphometrics_sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/p0sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/p1sub-0025479_ses-1_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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IACAS/sub-0025479/ses-1/mri/p2sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/p3sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/rp1sub-0025479_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025479/ses-1/mri/rp2sub-0025479_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025479/ses-1/mri/rp3sub-0025479_ses-1_run-1_T1w_affine.nii.gz

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IACAS/sub-0025479/ses-1/mri/t_sub-0025479_ses-1_run-1_T1w_affine_reorient.mat

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IACAS/sub-0025479/ses-1/mri/t_sub-0025479_ses-1_run-1_T1w_rigid_reorient.mat

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IACAS/sub-0025479/ses-1/mri/thalamus_sub-0025479_ses-1_run-1_T1w.csv

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IACAS/sub-0025479/ses-1/mri/thalamus_sub-0025479_ses-1_run-1_T1w.nii.gz

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IACAS/sub-0025479/ses-1/mri/wj_sub-0025479_ses-1_run-1_T1w.nii.gz

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