[DATALAD RUNCMD] Compute BNU_1/sub-0025895/ses-2

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/BNU_1/sub-0025895/ses-2/anat/sub-0025895_ses-2_run-1_T1w.nii.gz"
 ],
 "outputs": [
  "BNU_1/sub-0025895/ses-2"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

BNU_1/sub-0025895/ses-2/label/catROI_sub-0025895_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZW/MP/MD5E-s61346--c3438c6fc601af0e32ec68d90c1ef84f.mat/MD5E-s61346--c3438c6fc601af0e32ec68d90c1ef84f.mat

BNU_1/sub-0025895/ses-2/label/catROI_sub-0025895_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/FV/Pw/MD5E-s189077--376faa2f8c7a80b58b721174afa429a1.xml/MD5E-s189077--376faa2f8c7a80b58b721174afa429a1.xml

BNU_1/sub-0025895/ses-2/label/catROIs_sub-0025895_ses-2_run-1_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/g4/x4/MD5E-s120100--e5b5d0397082121f8d2bfb19e511ab57.mat/MD5E-s120100--e5b5d0397082121f8d2bfb19e511ab57.mat

BNU_1/sub-0025895/ses-2/label/catROIs_sub-0025895_ses-2_run-1_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/z7/JV/MD5E-s332210--589efd1cecc0471897e47070270afb10.xml/MD5E-s332210--589efd1cecc0471897e47070270afb10.xml

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fZ/39/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv/MD5E-s6136--50f3bdd0131fed1907cdc3853421e787.csv

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/59/VP/MD5E-s143253--3bf68ec4e26df2d1a7da39299faee175.nii.gz/MD5E-s143253--3bf68ec4e26df2d1a7da39299faee175.nii.gz

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/jj/fX/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv/MD5E-s12250--7714c270a22e7bfd7765b21fe4dbc773.csv

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/GX/zW/MD5E-s162370--e4b22faf1d6e9ebf8b8a78ad533c5daa.nii.gz/MD5E-s162370--e4b22faf1d6e9ebf8b8a78ad533c5daa.nii.gz

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Mk/2V/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv/MD5E-s24625--7f90d1d2497826b5422e2922f504392e.csv

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VV/fM/MD5E-s218578--efd1baed01ee471b5e46e70cc90687d9.nii.gz/MD5E-s218578--efd1baed01ee471b5e46e70cc90687d9.nii.gz

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/0m/PX/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv/MD5E-s30411--bd66f8658a8cab01372d71f820aff658.csv

BNU_1/sub-0025895/ses-2/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Ff/65/MD5E-s243016--ef332e5a140417b860ed9debe4622e32.nii.gz/MD5E-s243016--ef332e5a140417b860ed9debe4622e32.nii.gz

BNU_1/sub-0025895/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pX/V3/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv/MD5E-s433--b72d075bcae9b5ca765a39fdb70a1d86.csv

BNU_1/sub-0025895/ses-2/mri/Tian_Subcortex_S2_7T_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xw/Q4/MD5E-s20186--3f3ae8a2671d48f62a7fe852fac0cea0.nii.gz/MD5E-s20186--3f3ae8a2671d48f62a7fe852fac0cea0.nii.gz

BNU_1/sub-0025895/ses-2/mri/aal3_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/PW/Wq/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv/MD5E-s8539--0893049ededf3cc4f5e96b41b8938dc0.csv

BNU_1/sub-0025895/ses-2/mri/aal3_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/VK/J7/MD5E-s164720--3c0ab8a87411fd6cdfe940dd77f2b38a.nii.gz/MD5E-s164720--3c0ab8a87411fd6cdfe940dd77f2b38a.nii.gz

BNU_1/sub-0025895/ses-2/mri/anatomy3_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/13/J2/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv/MD5E-s8828--e4f7360ef28ecf9e0a773b8590a94261.csv

BNU_1/sub-0025895/ses-2/mri/anatomy3_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Fv/8g/MD5E-s117076--01714d39b58dc8d8b1d69428686500c1.nii.gz/MD5E-s117076--01714d39b58dc8d8b1d69428686500c1.nii.gz

BNU_1/sub-0025895/ses-2/mri/anon_misub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zZ/wx/MD5E-s4114123--b71d7a12f4423950485a120a90c4f6e1.nii.gz/MD5E-s4114123--b71d7a12f4423950485a120a90c4f6e1.nii.gz

BNU_1/sub-0025895/ses-2/mri/anon_msub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/QW/qZ/MD5E-s10299006--3d4a75396ad432e815b2c5421949581b.nii.gz/MD5E-s10299006--3d4a75396ad432e815b2c5421949581b.nii.gz

BNU_1/sub-0025895/ses-2/mri/cat_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/ZV/ZZ/MD5E-s89716--3dff70e9e09ca7b93862999c3ab917a2.nii.gz/MD5E-s89716--3dff70e9e09ca7b93862999c3ab917a2.nii.gz

BNU_1/sub-0025895/ses-2/mri/cobra_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vg/p7/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv/MD5E-s2767--afc9796ffee9c6ca3ca9d3316009fbc0.csv

BNU_1/sub-0025895/ses-2/mri/cobra_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/j1/m7/MD5E-s41455--48c51927f19ba59b7cc47adace948c19.nii.gz/MD5E-s41455--48c51927f19ba59b7cc47adace948c19.nii.gz

BNU_1/sub-0025895/ses-2/mri/hammers_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/xF/fj/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv/MD5E-s4409--6264a8be3c78a9e6e0204fef2bfda91d.csv

BNU_1/sub-0025895/ses-2/mri/hammers_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zg/9K/MD5E-s131540--7904fc3146704c9e6f6a910da0a34fcc.nii.gz/MD5E-s131540--7904fc3146704c9e6f6a910da0a34fcc.nii.gz

BNU_1/sub-0025895/ses-2/mri/ibsr_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/kZ/MJ/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv/MD5E-s1209--212307cb94c72a881f3ff865d3846481.csv

BNU_1/sub-0025895/ses-2/mri/ibsr_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vp/pV/MD5E-s137297--1b5a831281f5f2dc6ea8651f2eb4fcbc.nii.gz/MD5E-s137297--1b5a831281f5f2dc6ea8651f2eb4fcbc.nii.gz

BNU_1/sub-0025895/ses-2/mri/it_sub-0025895_ses-2_run-1_T1w_affine_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/Km/MD5E-s282--dc1d3bda6e1c847fc234fb17694bf0bd.mat/MD5E-s282--dc1d3bda6e1c847fc234fb17694bf0bd.mat

BNU_1/sub-0025895/ses-2/mri/it_sub-0025895_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KX/jP/MD5E-s284--5216852cdd63102d19df16445c27cbe9.mat/MD5E-s284--5216852cdd63102d19df16445c27cbe9.mat

BNU_1/sub-0025895/ses-2/mri/iy_sub-0025895_ses-2_run-1_T1w.nii.gz

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+../../../../.git/annex/objects/KZ/Qj/MD5E-s35672099--128eb5000060b11f3cc4bb24c8490995.nii.gz/MD5E-s35672099--128eb5000060b11f3cc4bb24c8490995.nii.gz

BNU_1/sub-0025895/ses-2/mri/julichbrain_sub-0025895_ses-2_run-1_T1w.csv

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+../../../../.git/annex/objects/pG/GJ/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv/MD5E-s8614--f221d431f4917cb1e67edccb24803500.csv

BNU_1/sub-0025895/ses-2/mri/julichbrain_sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/lpba40_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Jq/ff/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv/MD5E-s2398--3d690ee350e89df3b18143a8f653fff9.csv

BNU_1/sub-0025895/ses-2/mri/lpba40_sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/m0wp1sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/65/1g/MD5E-s2581595--e23cdc747992448cd6fb65139f0d8834.nii.gz/MD5E-s2581595--e23cdc747992448cd6fb65139f0d8834.nii.gz

BNU_1/sub-0025895/ses-2/mri/m0wp2sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/p9/kp/MD5E-s2291916--62e5738998e0b2a7bb7abbf5681e3715.nii.gz/MD5E-s2291916--62e5738998e0b2a7bb7abbf5681e3715.nii.gz

BNU_1/sub-0025895/ses-2/mri/m0wp3sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/fq/Mf/MD5E-s2548869--474c456c2ee698676aa2359092e7aeca.nii.gz/MD5E-s2548869--474c456c2ee698676aa2359092e7aeca.nii.gz

BNU_1/sub-0025895/ses-2/mri/mori_sub-0025895_ses-2_run-1_T1w.csv

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BNU_1/sub-0025895/ses-2/mri/mori_sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/mwp1sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/mwp2sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/mwp3sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/neuromorphometrics_sub-0025895_ses-2_run-1_T1w.csv

@@ -0,0 +1 @@
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BNU_1/sub-0025895/ses-2/mri/neuromorphometrics_sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/p0sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/p1sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/p2sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/p3sub-0025895_ses-2_run-1_T1w.nii.gz

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BNU_1/sub-0025895/ses-2/mri/rp1sub-0025895_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025895/ses-2/mri/rp2sub-0025895_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025895/ses-2/mri/rp3sub-0025895_ses-2_run-1_T1w_affine.nii.gz

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BNU_1/sub-0025895/ses-2/mri/t_sub-0025895_ses-2_run-1_T1w_affine_reorient.mat

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BNU_1/sub-0025895/ses-2/mri/t_sub-0025895_ses-2_run-1_T1w_rigid_reorient.mat

@@ -0,0 +1 @@
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BNU_1/sub-0025895/ses-2/mri/thalamus_sub-0025895_ses-2_run-1_T1w.csv

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BNU_1/sub-0025895/ses-2/mri/thalamus_sub-0025895_ses-2_run-1_T1w.nii.gz

@@ -0,0 +1 @@
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