[DATALAD RUNCMD] Compute NYU_2/sub-0025127/ses-1

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "singularity exec -B {pwd} --cleanenv code/pipeline/cat12.8.1_r2042.simg sh -e -u -x -c '\n        rm -rf {outputs[0]} ;\n        mkdir -p {outputs[0]}         && cp {inputs[0]} {outputs[0]}         && /singularity -b code/cat_standalone_segment_enigma_subdir_rp_MSA.m {outputs[0]}/*.nii.gz         && /singularity -b code/pipeline/batches/cat_standalone_batch-surfext.m {outputs[0]}/surf/lh.central.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick1.m {outputs[0]}/surf/lh.thickness.*         && /singularity -b code/pipeline/batches/cat_standalone_batch-thick2.m {outputs[0]}/surf/lh.thickness.*         && rm -f {outputs[0]}/*.nii*         && gzip {outputs[0]}/*/*.nii         '",
 "dsid": "6c5791d8-1803-48a1-bbaa-2b5e23b5f707",
 "exit": 0,
 "extra_inputs": [
  "code/pipeline/cat12.8.1_r2042.simg"
 ],
 "inputs": [
  "inputs/CORR/NYU_2/sub-0025127/ses-1/anat/sub-0025127_ses-1_run-2_T1w.nii.gz"
 ],
 "outputs": [
  "NYU_2/sub-0025127/ses-1"
 ],
 "pwd": "."
}
^^^ Do not change lines above ^^^

NYU_2/sub-0025127/ses-1/label/catROI_sub-0025127_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/93/1K/MD5E-s57605--4b427be7e70a34a65d309650a60c2bbc.mat/MD5E-s57605--4b427be7e70a34a65d309650a60c2bbc.mat

NYU_2/sub-0025127/ses-1/label/catROI_sub-0025127_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/X0/k6/MD5E-s189114--b67cfd2904b7c57f25713325903bb5d9.xml/MD5E-s189114--b67cfd2904b7c57f25713325903bb5d9.xml

NYU_2/sub-0025127/ses-1/label/catROI_sub-0025127_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/2X/mx/MD5E-s57557--94fa986493d058e25189d7653b7b5594.mat/MD5E-s57557--94fa986493d058e25189d7653b7b5594.mat

NYU_2/sub-0025127/ses-1/label/catROI_sub-0025127_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/x1/72/MD5E-s189039--df8952cdd2945ed18b3a61bff95c4ed3.xml/MD5E-s189039--df8952cdd2945ed18b3a61bff95c4ed3.xml

NYU_2/sub-0025127/ses-1/label/catROIs_sub-0025127_ses-1_run-1_T1w.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/k6/XK/MD5E-s120302--a206f70d58d78603a0934e10dd2db989.mat/MD5E-s120302--a206f70d58d78603a0934e10dd2db989.mat

NYU_2/sub-0025127/ses-1/label/catROIs_sub-0025127_ses-1_run-1_T1w.xml

@@ -1 +0,0 @@
-../../../../.git/annex/objects/5p/W8/MD5E-s332183--86e2a34e8da52f9e2fbfd046334d4057.xml/MD5E-s332183--86e2a34e8da52f9e2fbfd046334d4057.xml

NYU_2/sub-0025127/ses-1/label/catROIs_sub-0025127_ses-1_run-2_T1w.mat

@@ -0,0 +1 @@
+../../../../.git/annex/objects/41/9v/MD5E-s120293--74356e561fcc153de1bb33c69d2c29c8.mat/MD5E-s120293--74356e561fcc153de1bb33c69d2c29c8.mat

NYU_2/sub-0025127/ses-1/label/catROIs_sub-0025127_ses-1_run-2_T1w.xml

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Qp/jv/MD5E-s332132--6d37bd201f61c50eca59b8109666683e.xml/MD5E-s332132--6d37bd201f61c50eca59b8109666683e.xml

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Xw/87/MD5E-s131005--20ccee4a1dce26673ee812676bf0b8f4.nii.gz/MD5E-s131005--20ccee4a1dce26673ee812676bf0b8f4.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_100Parcels_17Networks_order_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/pZ/3j/MD5E-s130973--3802250e68e55e625e63bc0a20f2055d.nii.gz/MD5E-s130973--3802250e68e55e625e63bc0a20f2055d.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/JX/zf/MD5E-s148908--e7e36b6d4c2c60d821dfa912b239d002.nii.gz/MD5E-s148908--e7e36b6d4c2c60d821dfa912b239d002.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_200Parcels_17Networks_order_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/37/m3/MD5E-s148566--cf4b3b39d685a73331ba8299facd34a0.nii.gz/MD5E-s148566--cf4b3b39d685a73331ba8299facd34a0.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/GM/Xq/MD5E-s198869--2c71ffb4991e0dfacd84b1fef3b1fbc9.nii.gz/MD5E-s198869--2c71ffb4991e0dfacd84b1fef3b1fbc9.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_400Parcels_17Networks_order_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/4X/4X/MD5E-s198996--fb978b3464e3ed4030bcf1c234069e39.nii.gz/MD5E-s198996--fb978b3464e3ed4030bcf1c234069e39.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/1V/Zp/MD5E-s223311--42cf76954195c56415d15886a001d04c.nii.gz/MD5E-s223311--42cf76954195c56415d15886a001d04c.nii.gz

NYU_2/sub-0025127/ses-1/mri/Schaefer2018_600Parcels_17Networks_order_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/1m/11/MD5E-s222512--23e0fe843be72ca4226698a350123812.nii.gz/MD5E-s222512--23e0fe843be72ca4226698a350123812.nii.gz

NYU_2/sub-0025127/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/Jv/5x/MD5E-s18603--a6450d211542963525e57ba6a6f831ab.nii.gz/MD5E-s18603--a6450d211542963525e57ba6a6f831ab.nii.gz

NYU_2/sub-0025127/ses-1/mri/Tian_Subcortex_S2_7T_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/9W/jX/MD5E-s18711--fd4e908cc64b7b48ec9d124ce1f9b87a.nii.gz/MD5E-s18711--fd4e908cc64b7b48ec9d124ce1f9b87a.nii.gz

NYU_2/sub-0025127/ses-1/mri/aal3_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/vw/Pz/MD5E-s153944--924715622c4f92957f2018a3425ee0b9.nii.gz/MD5E-s153944--924715622c4f92957f2018a3425ee0b9.nii.gz

NYU_2/sub-0025127/ses-1/mri/aal3_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Wq/9m/MD5E-s153757--d86cd86e8652d61feae0daa6001602c4.nii.gz/MD5E-s153757--d86cd86e8652d61feae0daa6001602c4.nii.gz

NYU_2/sub-0025127/ses-1/mri/anatomy3_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/anatomy3_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/Vz/Pj/MD5E-s105169--552f4425060a1cf6e8ec3e77d0e796d5.nii.gz/MD5E-s105169--552f4425060a1cf6e8ec3e77d0e796d5.nii.gz

NYU_2/sub-0025127/ses-1/mri/anon_misub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/anon_misub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/zk/72/MD5E-s3324813--013cefc5e6f26314f69cf9747c6a4718.nii.gz/MD5E-s3324813--013cefc5e6f26314f69cf9747c6a4718.nii.gz

NYU_2/sub-0025127/ses-1/mri/anon_msub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/anon_msub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025127/ses-1/mri/cat_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
-../../../../.git/annex/objects/6J/f5/MD5E-s78049--a191a344284be39a5791777e9568a8b8.nii.gz/MD5E-s78049--a191a344284be39a5791777e9568a8b8.nii.gz

NYU_2/sub-0025127/ses-1/mri/cat_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
+../../../../.git/annex/objects/KJ/0z/MD5E-s79210--2fe671f8414bf7d77d25da3fb51c7d84.nii.gz/MD5E-s79210--2fe671f8414bf7d77d25da3fb51c7d84.nii.gz

NYU_2/sub-0025127/ses-1/mri/cobra_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/cobra_sub-0025127_ses-1_run-2_T1w.nii.gz

@@ -0,0 +1 @@
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NYU_2/sub-0025127/ses-1/mri/hammers_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/hammers_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/ibsr_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/ibsr_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/it_sub-0025127_ses-1_run-1_T1w_affine_reorient.mat

@@ -1 +0,0 @@
-../../../../.git/annex/objects/gp/5g/MD5E-s282--548a3ffc8404211327d81e5dd2de6962.mat/MD5E-s282--548a3ffc8404211327d81e5dd2de6962.mat

NYU_2/sub-0025127/ses-1/mri/it_sub-0025127_ses-1_run-1_T1w_rigid_reorient.mat

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/it_sub-0025127_ses-1_run-2_T1w_affine_reorient.mat

@@ -0,0 +1 @@
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NYU_2/sub-0025127/ses-1/mri/it_sub-0025127_ses-1_run-2_T1w_rigid_reorient.mat

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NYU_2/sub-0025127/ses-1/mri/iy_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/iy_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/julichbrain_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/julichbrain_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/lpba40_sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/lpba40_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/m0wp1sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/m0wp1sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/m0wp2sub-0025127_ses-1_run-1_T1w.nii.gz

@@ -1 +0,0 @@
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NYU_2/sub-0025127/ses-1/mri/m0wp2sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/m0wp3sub-0025127_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/m0wp3sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/mori_sub-0025127_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/mori_sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/mwp1sub-0025127_ses-1_run-1_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/mwp1sub-0025127_ses-1_run-2_T1w.nii.gz

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NYU_2/sub-0025127/ses-1/mri/mwp2sub-0025127_ses-1_run-1_T1w.nii.gz

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